View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17565_low_12 (Length: 352)

Name: NF17565_low_12
Description: NF17565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17565_low_12
NF17565_low_12
[»] chr3 (4 HSPs)
chr3 (1-327)||(30724510-30724836)
chr3 (177-249)||(51448506-51448579)
chr3 (177-241)||(9258298-9258363)
chr3 (177-249)||(52138240-52138313)
[»] chr7 (5 HSPs)
chr7 (60-205)||(48055658-48055804)
chr7 (60-205)||(20499404-20499550)
chr7 (177-249)||(11593365-11593438)
chr7 (177-249)||(33350603-33350676)
chr7 (177-249)||(46356648-46356721)
[»] chr4 (3 HSPs)
chr4 (177-249)||(1212104-1212177)
chr4 (178-249)||(48623324-48623396)
chr4 (177-249)||(435644-435717)
[»] chr1 (3 HSPs)
chr1 (177-249)||(32083542-32083615)
chr1 (177-249)||(43241178-43241251)
chr1 (177-249)||(49348191-49348264)
[»] chr8 (4 HSPs)
chr8 (67-126)||(3284794-3284853)
chr8 (177-241)||(15216077-15216142)
chr8 (177-249)||(36566038-36566111)
chr8 (178-249)||(12492639-12492711)
[»] chr6 (2 HSPs)
chr6 (184-241)||(2680855-2680913)
chr6 (178-249)||(6082813-6082885)
[»] scaffold0018 (1 HSPs)
scaffold0018 (177-249)||(30880-30953)
[»] chr5 (3 HSPs)
chr5 (177-249)||(1274677-1274750)
chr5 (177-249)||(2076271-2076344)
chr5 (177-249)||(10638710-10638783)
[»] chr2 (4 HSPs)
chr2 (177-249)||(452413-452486)
chr2 (177-249)||(2609940-2610013)
chr2 (177-249)||(8180207-8180280)
chr2 (60-108)||(876452-876499)


Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 30724836 - 30724510
Alignment:
Q  1 tcatgtgagagagatgtgcctagaaatccctagaaagaaatgagttaggattgcctatatatattcgagcaatcaaggatatatatgagggtgtctcaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30724836 tcatgtgagagagatgtgcctagaaatccctagaaagaaatgagttaggattgcctatatatattcgagcaatcaaggatatatatgagggtgtctcaac 30724737  T
Q  101 tagtgtgaagccacaagatgaagacatcgatgatttatccatagcaatataattccaactaggttcgaccttaaacccttatctttttactttgttttgg 200  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||    
T  30724736 tagtgtgaggccacaagatgaagacatcgatgatttatccatagcaatataattgcaactaggttcgaccttaaacccttatccttttactttgttttgg 30724637  T
Q  201 atgtaagtacataacacatccataagttagcatcgagatgtgtgcttttggttaatgatatatgccttcttagagagtcgttatatgggaggttgtggat 300  Q
    ||||| |||||||||| ||||| ||||||||||||||||||||| |||||||| ||||||||| ||| ||||||||||||||| |||||||||||   ||    
T  30724636 atgtacgtacataacatatccaaaagttagcatcgagatgtgtgtttttggttgatgatatattcctacttagagagtcgttaaatgggaggttggaaat 30724537  T
Q  301 ttcaataagaaccctagaaacatatgg 327  Q
    ||| | | |||||||||||||||||||    
T  30724536 ttccagacgaaccctagaaacatatgg 30724510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 177 - 249
Target Start/End: Complemental strand, 51448579 - 51448506
Alignment:
Q  177 ccttatctttttacttt-gttttggatgtaagtacataacacatccataagttagcatcgagatgtgtgctttt 249  Q
    ||||||||||||||||| ||||||||||||   ||  ||||||||||  ||||||||||||||||| |||||||    
T  51448579 ccttatctttttactttagttttggatgtattgacggaacacatccaagagttagcatcgagatgtatgctttt 51448506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 241
Target Start/End: Original strand, 9258298 - 9258363
Alignment:
Q  177 ccttatctttttacttt-gttttggatgtaagtacataacacatccataagttagcatcgagatgt 241  Q
    ||||||||||||||||| ||||||||||||  |||  ||||||||||  |||||||| ||||||||    
T  9258298 ccttatctttttactttagttttggatgtacttacggaacacatccaagagttagcaccgagatgt 9258363  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 249
Target Start/End: Original strand, 52138240 - 52138313
Alignment:
Q  177 ccttatctttttacttt-gttttggatgtaagtacataacacatccataagttagcatcgagatgtgtgctttt 249  Q
    ||||||||||||||||| ||||||||||||   ||  ||||||||||  |||||||| |||||||| |||||||    
T  52138240 ccttatctttttactttagttttggatgtattgacggaacacatccaagagttagcaccgagatgtatgctttt 52138313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 9e-18; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 60 - 205
Target Start/End: Complemental strand, 48055804 - 48055658
Alignment:
Q  60 tatattcgagcaatcaaggatatatatgagggtgtctcaactagtgtgaagccacaagatgaagacatcgatgatttatccatagcaatataattccaac 159  Q
    ||||||||||| || |||||||| ||| |||| |||||||||||||||| | |||| |||| |||||||| |||||| |||||| |||||  ||| || |    
T  48055804 tatattcgagctatgaaggatatctataagggagtctcaactagtgtgaggacacaggatggagacatcggtgatttttccataacaataggattgcacc 48055705  T
Q  160 taggttcgaccttaaacccttatctttttacttt-gttttggatgta 205  Q
     ||| |  ||| ||| ||||||||||||||||||  |||||||||||    
T  48055704 aaggctgaaccataagcccttatctttttactttacttttggatgta 48055658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 60 - 205
Target Start/End: Original strand, 20499404 - 20499550
Alignment:
Q  60 tatattcgagcaatcaaggatatatatgagggtgtctcaactagtgtgaagccacaagatgaagacatcgatgatttatccatagcaatataattccaac 159  Q
    ||||||| ||| || |||||||| ||| |||| |||||||||||||||| | |||| |||| ||||||||  | ||| |||||| |||||  ||| || |    
T  20499404 tatattcaagctatgaaggatatctataagggagtctcaactagtgtgaggacacatgatggagacatcggcgttttttccataacaataggattgcacc 20499503  T
Q  160 taggttcgaccttaaacccttatctttttacttt-gttttggatgta 205  Q
     |||||  ||| ||| ||||||||||||||||||  |||||||||||    
T  20499504 aaggttgaaccataagcccttatctttttactttacttttggatgta 20499550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 249
Target Start/End: Original strand, 11593365 - 11593438
Alignment:
Q  177 ccttatctttttacttt-gttttggatgtaagtacataacacatccataagttagcatcgagatgtgtgctttt 249  Q
    ||||||||||||||||| ||||||||||||   ||  ||||||||||  |||||||| |||||||| |||||||    
T  11593365 ccttatctttttactttagttttggatgtattgacggaacacatccaagagttagcaccgagatgtatgctttt 11593438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 249
Target Start/End: Complemental strand, 33350676 - 33350603
Alignment:
Q  177 ccttatctttttacttt-gttttggatgtaagtacataacacatccataagttagcatcgagatgtgtgctttt 249  Q
    ||||||||||||||||| ||||||||||||   ||  ||||||||||  |||||||| |||||||| |||||||    
T  33350676 ccttatctttttactttagttttggatgtattgacggaacacatccaagagttagcaccgagatgtatgctttt 33350603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 249
Target Start/End: Complemental strand, 46356721 - 46356648
Alignment:
Q  177 ccttatctttttacttt-gttttggatgtaagtacataacacatccataagttagcatcgagatgtgtgctttt 249  Q
    ||||||||||||||||| ||||||||||||   ||  ||||||||||  |||||||| |||||||| |||||||    
T  46356721 ccttatctttttactttagttttggatgtattgacggaacacatccaagagttagcaccgagatgtatgctttt 46356648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 177 - 249
Target Start/End: Complemental strand, 1212177 - 1212104
Alignment:
Q  177 ccttatctttttacttt-gttttggatgtaagtacataacacatccataagttagcatcgagatgtgtgctttt 249  Q
    ||||||||||| ||||| ||||||||||||  ||||||||||||| |  |||||||| |||||||| |||||||    
T  1212177 ccttatcttttcactttagttttggatgtacttacataacacatctaagagttagcaccgagatgtatgctttt 1212104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 249
Target Start/End: Complemental strand, 48623396 - 48623324
Alignment:
Q  178 cttatctttttacttt-gttttggatgtaagtacataacacatccataagttagcatcgagatgtgtgctttt 249  Q
    |||||||||||||||| ||||||||||||   || |||||||||||  |||||||| |||||||| |||||||    
T  48623396 cttatctttttactttagttttggatgtattgacgtaacacatccaagagttagcaccgagatgtatgctttt 48623324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 249
Target Start/End: Original strand, 435644 - 435717
Alignment:
Q  177 ccttatctttttacttt-gttttggatgtaagtacataacacatccataagttagcatcgagatgtgtgctttt 249  Q
    ||||||||||||||||| ||||||||||||   ||  ||||||||||  |||||||| |||||||| |||||||    
T  435644 ccttatctttttactttagttttggatgtattgacggaacacatccaagagttagcaccgagatgtatgctttt 435717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 177 - 249
Target Start/End: Complemental strand, 32083615 - 32083542
Alignment:
Q  177 ccttatctttttacttt-gttttggatgtaagtacataacacatccataagttagcatcgagatgtgtgctttt 249  Q
    ||||||||||||||||| ||||||||||||   ||| ||||||||||  |||||||| |||||||| |||||||    
T  32083615 ccttatctttttactttagttttggatgtactgacagaacacatccaagagttagcaccgagatgtatgctttt 32083542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 249
Target Start/End: Complemental strand, 43241251 - 43241178
Alignment:
Q  177 ccttatctttttacttt-gttttggatgtaagtacataacacatccataagttagcatcgagatgtgtgctttt 249  Q
    ||||||||||||||||| ||||||||||||   ||  ||||||||||  |||||||| |||||||| |||||||    
T  43241251 ccttatctttttactttagttttggatgtattgacggaacacatccaagagttagcaccgagatgtatgctttt 43241178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 249
Target Start/End: Complemental strand, 49348264 - 49348191
Alignment:
Q  177 ccttatctttttacttt-gttttggatgtaagtacataacacatccataagttagcatcgagatgtgtgctttt 249  Q
    ||||||||||||||||| ||||||||||||   ||  ||||||||||  |||||||| |||||||| |||||||    
T  49348264 ccttatctttttactttagttttggatgtattgacggaacacatccaagagttagcaccgagatgtatgctttt 49348191  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 67 - 126
Target Start/End: Original strand, 3284794 - 3284853
Alignment:
Q  67 gagcaatcaaggatatatatgagggtgtctcaactagtgtgaagccacaagatgaagaca 126  Q
    |||| ||||||||||| |||||||| ||||| |||||||||| | ||||||||| |||||    
T  3284794 gagctatcaaggatatgtatgagggagtctcgactagtgtgaggacacaagatggagaca 3284853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 241
Target Start/End: Complemental strand, 15216142 - 15216077
Alignment:
Q  177 ccttatctttttacttt-gttttggatgtaagtacataacacatccataagttagcatcgagatgt 241  Q
    ||||||||||||||||| ||||||||||||   ||| ||||||||||  |||||||| ||||||||    
T  15216142 ccttatctttttactttagttttggatgtactgacagaacacatccaagagttagcaccgagatgt 15216077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 249
Target Start/End: Complemental strand, 36566111 - 36566038
Alignment:
Q  177 ccttatctttttacttt-gttttggatgtaagtacataacacatccataagttagcatcgagatgtgtgctttt 249  Q
    ||||||||||||||||| ||||||||||||   ||  ||||||||||  |||||||| |||||||| |||||||    
T  36566111 ccttatctttttactttagttttggatgtattgacggaacacatccaagagttagcaccgagatgtatgctttt 36566038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 249
Target Start/End: Complemental strand, 12492711 - 12492639
Alignment:
Q  178 cttatctttttacttt-gttttggatgtaagtacataacacatccataagttagcatcgagatgtgtgctttt 249  Q
    |||||||||||||||| ||||||||||||   ||  ||||||||||  |||||||| |||||||| |||||||    
T  12492711 cttatctttttactttagttttggatgtattgacggaacacatccaagagttagcaccgagatgtatgctttt 12492639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 241
Target Start/End: Complemental strand, 2680913 - 2680855
Alignment:
Q  184 tttttacttt-gttttggatgtaagtacataacacatccataagttagcatcgagatgt 241  Q
    |||||||||| ||||||||||||  |||||||||||||||   ||||||||||||||||    
T  2680913 tttttactttagttttggatgtacttacataacacatccaagtgttagcatcgagatgt 2680855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 249
Target Start/End: Original strand, 6082813 - 6082885
Alignment:
Q  178 cttatctttttacttt-gttttggatgtaagtacataacacatccataagttagcatcgagatgtgtgctttt 249  Q
    |||||||||||||||| ||||||||||||   ||  ||||||||||  |||||||| |||||||| |||||||    
T  6082813 cttatctttttactttagttttggatgtattgacggaacacatccaagagttagcaccgagatgtatgctttt 6082885  T

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Target: scaffold0018 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 249
Target Start/End: Original strand, 30880 - 30953
Alignment:
Q  177 ccttatctttttacttt-gttttggatgtaagtacataacacatccataagttagcatcgagatgtgtgctttt 249  Q
    ||||||||||||||||| ||||||||||||   ||  ||||||||||  |||||||| |||||||| |||||||    
T  30880 ccttatctttttactttagttttggatgtattgacggaacacatccaagagttagcaccgagatgtatgctttt 30953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 249
Target Start/End: Original strand, 1274677 - 1274750
Alignment:
Q  177 ccttatctttttacttt-gttttggatgtaagtacataacacatccataagttagcatcgagatgtgtgctttt 249  Q
    ||||||||||||||||| ||||||||||||   ||  ||||||||||  |||||||| |||||||| |||||||    
T  1274677 ccttatctttttactttagttttggatgtattgacggaacacatccaagagttagcaccgagatgtatgctttt 1274750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 249
Target Start/End: Complemental strand, 2076344 - 2076271
Alignment:
Q  177 ccttatctttttacttt-gttttggatgtaagtacataacacatccataagttagcatcgagatgtgtgctttt 249  Q
    ||||||||||||||||| ||||||||||||   ||  ||||||||||  |||||||| |||||||| |||||||    
T  2076344 ccttatctttttactttagttttggatgtattgacggaacacatccaagagttagcaccgagatgtatgctttt 2076271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 249
Target Start/End: Original strand, 10638710 - 10638783
Alignment:
Q  177 ccttatctttttacttt-gttttggatgtaagtacataacacatccataagttagcatcgagatgtgtgctttt 249  Q
    ||||||||||||||||| ||||||||||||   ||  ||||||||||  |||||||| |||||||| |||||||    
T  10638710 ccttatctttttactttagttttggatgtattgacggaacacatccaagagttagcaccgagatgtatgctttt 10638783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 249
Target Start/End: Complemental strand, 452486 - 452413
Alignment:
Q  177 ccttatctttttacttt-gttttggatgtaagtacataacacatccataagttagcatcgagatgtgtgctttt 249  Q
    ||||||||||||||||| ||||||||||||   ||  ||||||||||  |||||||| |||||||| |||||||    
T  452486 ccttatctttttactttagttttggatgtattgacggaacacatccaagagttagcaccgagatgtatgctttt 452413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 249
Target Start/End: Original strand, 2609940 - 2610013
Alignment:
Q  177 ccttatctttttacttt-gttttggatgtaagtacataacacatccataagttagcatcgagatgtgtgctttt 249  Q
    ||||||||||||||||| ||||||||||||   ||  ||||||||||  |||||||| |||||||| |||||||    
T  2609940 ccttatctttttactttagttttggatgtattgacggaacacatccaagagttagcaccgagatgtatgctttt 2610013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 249
Target Start/End: Original strand, 8180207 - 8180280
Alignment:
Q  177 ccttatctttttacttt-gttttggatgtaagtacataacacatccataagttagcatcgagatgtgtgctttt 249  Q
    ||||||||||||||||| ||||||||||||   ||  ||||||||||  |||||||| |||||||| |||||||    
T  8180207 ccttatctttttactttagttttggatgtattgacgaaacacatccaagagttagcaccgagatgtatgctttt 8180280  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 108
Target Start/End: Original strand, 876452 - 876499
Alignment:
Q  60 tatattcgagcaatcaaggatatatatgagggtgtctcaactagtgtga 108  Q
    ||||||||||| ||||||||||| |||||||| ||||| ||||||||||    
T  876452 tatattcgagctatcaaggatatgtatgaggg-gtctcgactagtgtga 876499  T

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