View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17565_low_16 (Length: 316)
Name: NF17565_low_16
Description: NF17565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17565_low_16 |
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| [»] scaffold0275 (1 HSPs) |
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Alignment Details
Target: scaffold0275 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: scaffold0275
Description:
Target: scaffold0275; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 24 - 300
Target Start/End: Original strand, 10820 - 11099
Alignment:
| Q |
24 |
taataattagtaccttgctgaatagagcaatgtaattaggtgcaatacttt-aagcccgtcttcgtttattaggtttagttacatagttttcatataagt |
122 |
Q |
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| T |
10820 |
taataattagtaccttgctgaatagagcaatgtaattaggtgcaatacttttaagcccatcttcgtttattaggtttagatacatagttttcatataagt |
10919 |
T |
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| Q |
123 |
gactttaaacttcctgtattatattttaagaaataagaactaaaagttagatagataaattgtgagaatcatttgcagcttagtattgctctaccagagt |
222 |
Q |
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| T |
10920 |
gattttaaacttcctgtattatattttaagaaataagaactaaaagttagatagataaattgtgagaatcatttgcagcttagtattgctctaccagagt |
11019 |
T |
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| Q |
223 |
--tggtcatgttcatattcatttttacaacattttcaatgacttgcttcagacatacaaatcagatactgctagaaaata |
300 |
Q |
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| T |
11020 |
tatagtcatgttcatattcatttttacaacattttcaatgacttgcttcagacataccaatcagatactgctagaaaata |
11099 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 268
Target Start/End: Original strand, 51118299 - 51118386
Alignment:
| Q |
183 |
tgtgagaatcatttgcagcttagtattgctctaccagag--ttggtcatgttcatattcatttttacaacattttcaatgacttgctt |
268 |
Q |
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| T |
51118299 |
tgtgagaattcttttcagcttagtattgctctaccagagatatagtcatggtcatattaatgtttgcaacatcttgaatgccttgctt |
51118386 |
T |
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