View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17565_low_17 (Length: 309)

Name: NF17565_low_17
Description: NF17565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17565_low_17
NF17565_low_17
[»] chr2 (6 HSPs)
chr2 (19-294)||(10473002-10473277)
chr2 (61-294)||(10517579-10517811)
chr2 (58-258)||(10491930-10492127)
chr2 (60-258)||(10487620-10487818)
chr2 (28-258)||(7482355-7482586)
chr2 (58-230)||(7477241-7477412)
[»] chr5 (1 HSPs)
chr5 (19-294)||(33575772-33576055)
[»] chr1 (2 HSPs)
chr1 (66-186)||(5897651-5897771)
chr1 (64-186)||(38462062-38462184)
[»] chr8 (1 HSPs)
chr8 (66-168)||(323846-323947)
[»] chr4 (2 HSPs)
chr4 (195-294)||(52092211-52092310)
chr4 (66-114)||(52092373-52092421)
[»] chr3 (2 HSPs)
chr3 (207-294)||(48753401-48753488)
chr3 (64-113)||(48753297-48753346)


Alignment Details
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 19 - 294
Target Start/End: Complemental strand, 10473277 - 10473002
Alignment:
Q  19 aaaacagagtagtaaaacaaacaataaagacaaatgactaaaaggtgttggtattattgagttagaaattggaaatgcagatgggaacacactcccaatc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10473277 aaaacagagtagtaaaacaaacaataaagacaaatgactaaaaggtgttggtattattgagttagaaattggaaatgcagatgggaacacactcccaatc 10473178  T
Q  119 caccctagagttgagctccgcagagagattacaattctctgcctaacaaacagcaaacaaacttctgcttaacctccccccttttttggatcactcctta 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  10473177 caccctagagttgagctccgcagagagattacaattctctgcctaacaaacagcaaacaaactactgcataacctccccccttttttggatcactcctta 10473078  T
Q  219 ataacagaaatcataactaaaccacactttctcatactgacactgctgtcacatcagtagtgctgcttcctgtttc 294  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  10473077 ataacagaaatcataactaaaccacactttctcatactgacactgctgccacatcagtagtgctgcttcctgtttc 10473002  T

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Target: chr2; HSP #2
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 61 - 294
Target Start/End: Complemental strand, 10517811 - 10517579
Alignment:
Q  61 aggtgttggtattattgagttagaaattggaaatgcagatgggaacacactcccaatccaccctagagttgagctccgcagagagattacaattctctgc 160  Q
    |||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||    
T  10517811 aggtgttggtattattgaattagaaattgcaaatacagatgggaacacactcccaatccaccctggagctgagctccgcagagagattacaattctatgc 10517712  T
Q  161 ctaacaaacagcaaacaaacttctgcttaacctccccccttttttggatcactccttaataacagaaatcataactaaaccacactttctcatactgaca 260  Q
    || |||||||| |||||||||||||| ||||||||||||||||| ||||  |||||| ||||||||||| ||||  ||||||||| |||||| ||||||     
T  10517711 ctcacaaacagaaaacaaacttctgcataacctcccccctttttcggat-tctccttgataacagaaattataatcaaaccacaccttctcacactgacc 10517613  T
Q  261 ctgctgtcacatcagtagtgctgcttcctgtttc 294  Q
    || ||| ||||||||||||| | |||||| ||||    
T  10517612 ctactgccacatcagtagtgatacttcctatttc 10517579  T

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Target: chr2; HSP #3
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 58 - 258
Target Start/End: Complemental strand, 10492127 - 10491930
Alignment:
Q  58 aaaaggtgttggtattattgagttagaaattggaaatgcagatgggaacacactcccaatccaccctagagttgagctccgcagagagattacaattctc 157  Q
    ||||||||||||||||||||| |||| ||||| |||||||||||||||| ||| ||||| |||||| |||| |||||||| |||||| ||||||||||||    
T  10492127 aaaaggtgttggtattattgaattaggaattgcaaatgcagatgggaactcacacccaacccacccaagagctgagctccacagagaaattacaattctc 10492028  T
Q  158 tgcctaacaaacagcaaacaaacttctgcttaacctccccccttttttggatcactccttaataacagaaatcataactaaaccacactttctcatactg 257  Q
    | |||||||||||||||||||||| |||| |||||||||||||||||   | |||||||||||||||| ||||||||||||| ||||| |||||||||||    
T  10492027 ttcctaacaaacagcaaacaaactcctgcataacctccccccttttt---agcactccttaataacaggaatcataactaaatcacaccttctcatactg 10491931  T

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Target: chr2; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 60 - 258
Target Start/End: Complemental strand, 10487818 - 10487620
Alignment:
Q  60 aaggtgttggtattattgagttagaaattggaaatgcagatgggaacacactcccaatccaccctagagttgagctccgcagagagattacaattctctg 159  Q
    ||||||||| ||||||||| |||| ||||| ||||| |||||||||||||| |||| | ||||| |||| |||||||| |||||| ||||||||||||||    
T  10487818 aaggtgttgttattattgaattaggaattgaaaatgtagatgggaacacacgcccatttcacccaagagctgagctccacagagaaattacaattctctg 10487719  T
Q  160 cctaacaaacagcaaacaaacttctgcttaacctccccccttttttggatcactccttaataacagaaatcataactaaaccacactttctcatactga 258  Q
    ||||||||||||||||||||||||||| ||| ||||| |||||||   | |||||||||||||||   ||||||||||||||| || ||||||||||||    
T  10487718 cctaacaaacagcaaacaaacttctgcataatctcccgcctttttcatagcactccttaataacatttatcataactaaaccataccttctcatactga 10487620  T

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Target: chr2; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 28 - 258
Target Start/End: Original strand, 7482355 - 7482586
Alignment:
Q  28 tagtaaaacaaacaataaagacaaatgacta--aaaggtgttggtattattgagttagaaattggaaatgcagatgggaacacactcccaatccacccta 125  Q
    |||||||||||||||| || | |||||| ||  ||||||||| ||| ||||||||||| ||||| ||||||  |||||||| ||| |||||||||||| |    
T  7482355 tagtaaaacaaacaattaacaaaaatgagtagaaaaggtgttcgtaatattgagttaggaattgaaaatgcttatgggaactcacacccaatccacccaa 7482454  T
Q  126 gagttgagctccgcagagagattacaattctctgcctaacaaacagcaaacaaacttctgcttaacctccccccttttttggatcactccttaataacag 225  Q
    ||| |||| | | || ||| |||| |||||||||||||||||||||||||||| ||||||| |||||||||||| |||| | | ||||||||||||||||    
T  7482455 gagctgagtttcacatagaaattaaaattctctgcctaacaaacagcaaacaatcttctgcataacctcccccc-ttttcgtagcactccttaataacag 7482553  T
Q  226 aaatcataactaaaccacactttctcatactga 258  Q
    |||| |||| |||||||||| ||||||||||||    
T  7482554 aaattataattaaaccacaccttctcatactga 7482586  T

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Target: chr2; HSP #6
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 58 - 230
Target Start/End: Original strand, 7477241 - 7477412
Alignment:
Q  58 aaaaggtgttggtattattgagttagaaattggaaatgcagatgggaacacactcccaatccaccctagagttgagctccgcagagagattacaattctc 157  Q
    ||||||||||||||||||||| |||| ||||| ||||||||||||||||  || ||||| |||||| |||| |||||||| |||||| ||||||||||||    
T  7477241 aaaaggtgttggtattattgaattaggaattgcaaatgcagatgggaactaacacccaacccacccaagagctgagctccacagagaaattacaattctc 7477340  T
Q  158 tgcctaacaaacagcaaacaaacttctgcttaacctccccccttttttggatcactccttaataacagaaatc 230  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||||   | |||| ||||||||||||||||    
T  7477341 tgcctaacaaacagcaaacaaacttctgcataacct-ccccctttttcatagcacttcttaataacagaaatc 7477412  T

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Target: chr5 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 19 - 294
Target Start/End: Original strand, 33575772 - 33576055
Alignment:
Q  19 aaaacagagtagta--aaacaaacaataaagacaaatgacta--aaaggtgttggtattattgagttagaaattggaaatgcagatgggaacacactccc 114  Q
    ||||||||| ||||  |||||| ||||||| |||||||| ||  |||||||||||||||||||| ||||||| || ||||||| ||||||||||||||||    
T  33575772 aaaacagagaagtagtaaacaagcaataaacacaaatgagtagaaaaggtgttggtattattgaattagaaaatgaaaatgcaaatgggaacacactccc 33575871  T
Q  115 aatccaccctagagttgagctccgcagagagattacaattctctgcctaacaaacagcaaacaaacttctgctt----aacctccccccttttttggatc 210  Q
    |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||| |    |||||||||||||||| |||||    
T  33575872 aatccaccctagagctgagctccgcagagagattacaattctccgcctaacaaacagcagacaaatttctgcataaccaacctcccccctttttcggatc 33575971  T
Q  211 actccttaataacagaaatcataactaaaccacactttctcatactgacactgctgtcacatcagtagtgctgcttcctgtttc 294  Q
    |||||||||||||||||||||||| |||||||||| |||||  |||||| || ||| ||||||||||||||| |||||| ||||    
T  33575972 actccttaataacagaaatcataaataaaccacaccttctcgcactgaccctactgccacatcagtagtgctacttcctatttc 33576055  T

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Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 66 - 186
Target Start/End: Complemental strand, 5897771 - 5897651
Alignment:
Q  66 ttggtattattgagttagaaattggaaatgcagatgggaacacactcccaatccaccctagagttgagctccgcagagagattacaattctctgcctaac 165  Q
    ||||||||| ||| | |||||||| ||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||    
T  5897771 ttggtattagtgaatcagaaattgcaaatgcagatgggaacacactcccaatccaccccagagctgagctccacagagagattacaattctctgcctaac 5897672  T
Q  166 aaacagcaaacaaacttctgc 186  Q
     ||||| ||||||||||||||    
T  5897671 taacagaaaacaaacttctgc 5897651  T

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Target: chr1; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 64 - 186
Target Start/End: Original strand, 38462062 - 38462184
Alignment:
Q  64 tgttggtattattgagttagaaattggaaatgcagatgggaacacactcccaatccaccctagagttgagctccgcagagagattacaattctctgccta 163  Q
    ||||||||||||||| |||||||||| |||||||||||||| || ||| ||||||||||| |||| ||||||||  |||||||||||| |||||||||||    
T  38462062 tgttggtattattgaattagaaattgcaaatgcagatgggagcatactaccaatccaccccagagctgagctccatagagagattacacttctctgccta 38462161  T
Q  164 acaaacagcaaacaaacttctgc 186  Q
    |||||||| ||||||||||||||    
T  38462162 acaaacagaaaacaaacttctgc 38462184  T

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Target: chr8 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 66 - 168
Target Start/End: Complemental strand, 323947 - 323846
Alignment:
Q  66 ttggtattattgagttagaaattggaaatgcagatgggaacacactcccaatccaccctagagttgagctccgcagagagattacaattctctgcctaac 165  Q
    ||||||||||||| |||||||| | |||||||||||||||||||||||||||||||| ||| | |||||||| || | | ||||||||||||||||||||    
T  323947 ttggtattattgaattagaaat-gcaaatgcagatgggaacacactcccaatccaccatagggctgagctccacacataaattacaattctctgcctaac 323849  T
Q  166 aaa 168  Q
    |||    
T  323848 aaa 323846  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 195 - 294
Target Start/End: Complemental strand, 52092310 - 52092211
Alignment:
Q  195 cccccttttttggatcactccttaataacagaaatcataactaaaccacactttctcatactgacactgctgtcacatcagtagtgctgcttcctgtttc 294  Q
    |||||||| | |||||| |||||||||||| |||||||||||||||||| |  ||||| |||| | || ||| |||||||| |||||| |||||| ||||    
T  52092310 ccccctttctcggatcaatccttaataacataaatcataactaaaccacgccctctcaaactggccctactgccacatcagcagtgctacttcctatttc 52092211  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 66 - 114
Target Start/End: Complemental strand, 52092421 - 52092373
Alignment:
Q  66 ttggtattattgagttagaaattggaaatgcagatgggaacacactccc 114  Q
    ||||||||||||| |||||||||| ||||||||||| ||||||||||||    
T  52092421 ttggtattattgaattagaaattgaaaatgcagatgagaacacactccc 52092373  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 207 - 294
Target Start/End: Original strand, 48753401 - 48753488
Alignment:
Q  207 gatcactccttaataacagaaatcataactaaaccacactttctcatactgacactgctgtcacatcagtagtgctgcttcctgtttc 294  Q
    ||||| |||||||||||| |||||||||||||||||| |  ||||| |||| | || ||| |||||||| |||||| |||||| ||||    
T  48753401 gatcaatccttaataacataaatcataactaaaccacgccctctcaaactggccctactgccacatcagcagtgctacttcctatttc 48753488  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 64 - 113
Target Start/End: Original strand, 48753297 - 48753346
Alignment:
Q  64 tgttggtattattgagttagaaattggaaatgcagatgggaacacactcc 113  Q
    ||||||||||||||| |||||||||| |||| |||||| |||||||||||    
T  48753297 tgttggtattattgaattagaaattgaaaatacagatgagaacacactcc 48753346  T

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