View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17565_low_21 (Length: 253)

Name: NF17565_low_21
Description: NF17565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17565_low_21
NF17565_low_21
[»] chr3 (4 HSPs)
chr3 (1-171)||(8341395-8341563)
chr3 (109-238)||(8332884-8333013)
chr3 (5-74)||(26727089-26727158)
chr3 (202-238)||(8341332-8341368)
[»] chr2 (4 HSPs)
chr2 (122-230)||(29229191-29229304)
chr2 (122-230)||(29342491-29342604)
chr2 (1-70)||(29229037-29229106)
chr2 (1-70)||(29342336-29342405)
[»] chr1 (3 HSPs)
chr1 (1-72)||(44144468-44144539)
chr1 (1-77)||(44786204-44786280)
chr1 (6-72)||(44611310-44611376)
[»] scaffold0017 (1 HSPs)
scaffold0017 (1-72)||(173423-173489)


Alignment Details
Target: chr3 (Bit Score: 156; Significance: 6e-83; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 8341563 - 8341395
Alignment:
Q  1 catggaatgtaataatagtatagtttcccatcattatttcaacaacaaaataaagatgagattctctaatggatgtttatattcttatacaaacacacac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8341563 catggaatgtaataatagtatagtttcccatcattatttcaacaacaaaataaagatgagattctctaatggatgtttatattcttatacaaacacacac 8341464  T
Q  101 acatatatatatagaaaattatgtttaaggaaggtgtattttcctgcttccttcttatcttaaacctgtaa 171  Q
    |||||||  ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8341463 acatata--tatagaaaattgtgtttaaggaaggtgtattttcctgcttccttcttatcttaaacctgtaa 8341395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 109 - 238
Target Start/End: Complemental strand, 8333013 - 8332884
Alignment:
Q  109 atatagaaaattatgtttaaggaaggtgtattttcctgcttccttcttatcttaaacctgtaattttatcgtccatccatttaatgttcaaattatattc 208  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8333013 atatagaaaattgtgtttaaggaaggtgtattttcctgcttccttcttatcttaaacctgtaattttatcgtccatccatttaatgttcaaattatattc 8332914  T
Q  209 actaacaaagataatcttttgtgttatatg 238  Q
    | |||||||||||||||||||| |||||||    
T  8332913 attaacaaagataatcttttgtcttatatg 8332884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 74
Target Start/End: Complemental strand, 26727158 - 26727089
Alignment:
Q  5 gaatgtaataatagtatagtttcccatcattatttcaacaacaaaataaagatgagattctctaatggat 74  Q
    |||| ||| |||| ||||||||| |||||| ||||||||||||||||||||||| | |||||||||||||    
T  26727158 gaatataagaataatatagtttctcatcataatttcaacaacaaaataaagatgggtttctctaatggat 26727089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 202 - 238
Target Start/End: Complemental strand, 8341368 - 8341332
Alignment:
Q  202 tatattcactaacaaagataatcttttgtgttatatg 238  Q
    ||||||||||||||||||||||||||||| |||||||    
T  8341368 tatattcactaacaaagataatcttttgtcttatatg 8341332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 122 - 230
Target Start/End: Original strand, 29229191 - 29229304
Alignment:
Q  122 tgtttaaggaaggtgt--attttcctgcttccttcttatcttaaacctgtaattttatcgtccatccatttaatgttc---aaattatattcactaacaa 216  Q
    ||||||||||||||||  |||||||||||||||||||||  | |||||||||||||||||||||| ||||||||||||   ||||||||||||||  |||    
T  29229191 tgtttaaggaaggtgtgtattttcctgcttccttcttattgttaacctgtaattttatcgtccattcatttaatgttcaaaaaattatattcactctcaa 29229290  T
Q  217 agataatcttttgt 230  Q
    ||||||||||||||    
T  29229291 agataatcttttgt 29229304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 122 - 230
Target Start/End: Original strand, 29342491 - 29342604
Alignment:
Q  122 tgtttaaggaaggtgt--attttcctgcttccttcttatcttaaacctgtaattttatcgtccatccatttaatgttc---aaattatattcactaacaa 216  Q
    ||||||||||||||||  |||||||||||||||||||||  | |||||||||||||||||||||| ||||||||||||   ||||||||||||||  |||    
T  29342491 tgtttaaggaaggtgtgtattttcctgcttccttcttattgttaacctgtaattttatcgtccattcatttaatgttcaaaaaattatattcactctcaa 29342590  T
Q  217 agataatcttttgt 230  Q
    ||||||||||||||    
T  29342591 agataatcttttgt 29342604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 29229037 - 29229106
Alignment:
Q  1 catggaatgtaataatagtatagtttcccatcattatttcaacaacaaaataaagatgagattctctaat 70  Q
    |||| |||||| ||||| ||||||||| |||||| |||||||||||||| ||| ||||| ||||||||||    
T  29229037 catgaaatgtagtaatattatagtttctcatcatcatttcaacaacaaagtaatgatgacattctctaat 29229106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 29342336 - 29342405
Alignment:
Q  1 catggaatgtaataatagtatagtttcccatcattatttcaacaacaaaataaagatgagattctctaat 70  Q
    |||| |||||| ||||| ||||||||| |||||| |||||||||||||| ||| ||||| ||||||||||    
T  29342336 catgaaatgtagtaatattatagtttctcatcatcatttcaacaacaaagtaatgatgacattctctaat 29342405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 44144539 - 44144468
Alignment:
Q  1 catggaatgtaataatagtatagtttcccatcattatttcaacaacaaaataaagatgagattctctaatgg 72  Q
    |||| |||| ||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  44144539 catgtaatgcaataatattatagtttctcatcatcatttcaacaacaaaataaagatgagattctctaatgg 44144468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 44786204 - 44786280
Alignment:
Q  1 catggaatgtaataatagtatagtttcccatcattatttcaacaacaaaataaagatgagattctctaatggatgtt 77  Q
    |||| |||||||||||| ||||||||| |||||| |||||||  ||||||||||||||||||||||| |||||||||    
T  44786204 catgtaatgtaataatattatagtttctcatcatcatttcaaagacaaaataaagatgagattctcttatggatgtt 44786280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 6 - 72
Target Start/End: Complemental strand, 44611376 - 44611310
Alignment:
Q  6 aatgtaataatagtatagtttcccatcattatttcaacaacaaaataaagatgagattctctaatgg 72  Q
    |||||| ||||| ||||||||| |||||| |||||||||||||||||||||||| ||||||||||||    
T  44611376 aatgtattaatattatagtttctcatcataatttcaacaacaaaataaagatgaaattctctaatgg 44611310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 173489 - 173423
Alignment:
Q  1 catggaatgtaataatagtatagtttcccatcattatttcaacaacaaaataaagatgagattctctaatgg 72  Q
    |||| |||||||||||| ||||||||| |||||||||||||     || || ||||||||||||||||||||    
T  173489 catgtaatgtaataatattatagtttctcatcattatttca-----aacattaagatgagattctctaatgg 173423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University