View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17565_low_26 (Length: 236)
Name: NF17565_low_26
Description: NF17565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17565_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 32716716 - 32716936
Alignment:
| Q |
1 |
ttgcggcagtgttgaatgtgattgatgttgcagctatttccactcatttccataattttcctttctctttcaaacacatattaccagcctttgtttttgg |
100 |
Q |
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| T |
32716716 |
ttgcggcagtgttgaatgtgattgatgttgcagctatttccactcatttctataattttcctttctctttcaaacacatattaccagcctttgtttttgg |
32716815 |
T |
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| Q |
101 |
atatgagtgatggattttgatgagtttgaacacgttgatattggaaggattgacaatgaattgatttgggtgtttaaaatgagaattttacaaaggaaag |
200 |
Q |
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| T |
32716816 |
atatgagtgatggattttgatgagtttgaacacgttgatattggaaggattgacaatgaattgatttgggtgtttaaaatgagaattttacaaaggaaag |
32716915 |
T |
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| Q |
201 |
tggaatttgcggtgtgggttg |
221 |
Q |
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||||||||||||||||||||| |
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| T |
32716916 |
tggaatttgcggtgtgggttg |
32716936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 34176931 - 34176710
Alignment:
| Q |
1 |
ttgcggcagtgttgaatgtgattgatgttgcagctatttccactcatttccataattttcctttctctttcaaacacatattacca-gcctttgtttttg |
99 |
Q |
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| T |
34176931 |
ttgcggcagtgatgaatgtgattgatgttgcagttatttcctctcatttctatagttttcctttctctttcaaacacatattaccatgcctttgtttttg |
34176832 |
T |
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| Q |
100 |
gatatgagtgatggattttgatgagtttgaacacgttgatattggaaggattgacaatgaattgatttgggtgtttaaaatgagaattttacaaaggaaa |
199 |
Q |
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| T |
34176831 |
gatatgagtgatggattttgatgagtttgaacacgttgatattggaaggattgacagtgaattgatttgggtgtttaaaatgagaattttacaaaggaaa |
34176732 |
T |
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| Q |
200 |
gtggaatttgcggtgtgggttg |
221 |
Q |
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| T |
34176731 |
gtggaatttgcggtgtgggttg |
34176710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 23455424 - 23455475
Alignment:
| Q |
4 |
cggcagtgttgaatgtgattgatgttgcagctatttccactcatttccataa |
55 |
Q |
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| T |
23455424 |
cggcagtgttgaatgtgattgatgttgcagctatttccactcatttctataa |
23455475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 94 - 145
Target Start/End: Original strand, 23455501 - 23455552
Alignment:
| Q |
94 |
tttttggatatgagtgatggattttgatgagtttgaacacgttgatattgga |
145 |
Q |
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| T |
23455501 |
tttttggatatgggtgatggattttgatgagtttgaacacgttgatattgga |
23455552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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