View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17565_low_28 (Length: 213)
Name: NF17565_low_28
Description: NF17565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17565_low_28 |
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Alignment Details
Target: chr6 (Bit Score: 114; Significance: 5e-58; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 9 - 195
Target Start/End: Complemental strand, 27110412 - 27110235
Alignment:
| Q |
9 |
ggagcagagagaatatggctatgaacggtatattgaaaaccattaaatattgttataattgttatagtgagatgacggattagagttttccattgtaaag |
108 |
Q |
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| T |
27110412 |
ggagaagagagaatatggctatgaacggtatattgaaaatcattaaatattgttata---------gtgagatgaacgattagagttttccattgtaaaa |
27110322 |
T |
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| Q |
109 |
gtattgtccaaaattacaaacnnnnnnncaattttcaataccattaaataaaaaatttcaattatactttataattaatactactta |
195 |
Q |
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| T |
27110321 |
gtattgtccaaaattacaaactttttttcaattttcaataccattaaataaaaaatttcaattatactttataattaatactactta |
27110235 |
T |
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Target: chr6; HSP #2
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 9 - 195
Target Start/End: Complemental strand, 27152209 - 27152032
Alignment:
| Q |
9 |
ggagcagagagaatatggctatgaacggtatattgaaaaccattaaatattgttataattgttatagtgagatgacggattagagttttccattgtaaag |
108 |
Q |
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|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||| |
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| T |
27152209 |
ggagaagagagaatatggctatgaacggtatattgaaaatcattaaatattgttata---------gtgagatgaacgattagagttttccattgtaaaa |
27152119 |
T |
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| Q |
109 |
gtattgtccaaaattacaaacnnnnnnncaattttcaataccattaaataaaaaatttcaattatactttataattaatactactta |
195 |
Q |
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| T |
27152118 |
gtattgtccaaaattacaaactttttttcaattttcaataccattaaataaaaaatttcaattatactttataattaatactactta |
27152032 |
T |
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