View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17565_low_3 (Length: 501)

Name: NF17565_low_3
Description: NF17565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17565_low_3
NF17565_low_3
[»] chr5 (1 HSPs)
chr5 (14-483)||(33184394-33184863)
[»] scaffold0482 (4 HSPs)
scaffold0482 (14-202)||(733-921)
scaffold0482 (387-436)||(971-1020)
scaffold0482 (450-483)||(1019-1052)
scaffold0482 (304-365)||(918-979)
[»] chr8 (12 HSPs)
chr8 (14-202)||(7790992-7791180)
chr8 (14-202)||(7811577-7811765)
chr8 (14-202)||(7774345-7774533)
chr8 (387-436)||(7774246-7774295)
chr8 (387-436)||(7790893-7790942)
chr8 (387-436)||(7811478-7811527)
chr8 (450-483)||(7774214-7774247)
chr8 (450-483)||(7790861-7790894)
chr8 (450-483)||(7811446-7811479)
chr8 (304-365)||(7811519-7811580)
chr8 (304-365)||(7774287-7774348)
chr8 (304-365)||(7790934-7790995)
[»] chr1 (1 HSPs)
chr1 (378-422)||(41147842-41147886)


Alignment Details
Target: chr5 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 14 - 483
Target Start/End: Original strand, 33184394 - 33184863
Alignment:
Q  14 aatatcatcaagaactaatgaaccaagagtttcaatagcttcatcatagttttgttctgtcacaccaaagcttccacggcaaaaaccataaccccatcta 113  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||    
T  33184394 aatatcatcaagaactaatgaaccaagaatttcaatagcttcatcatagttttgttgtgtcacaccaaagcttccacggcaaaaaccataaccccaccta 33184493  T
Q  114 ccaaaccaagagtgaccataagcaactccatgaagtaagcgaagatccattgaccttttccttgaagcatcttcaactgcaatgtacctacattaaacaa 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  33184494 ccaaaccaagagtgaccataagcaactccatgaagtaagcgaagatccattgacctttttcttgaagcatcttcaactgcaatgtacctacattaaacaa 33184593  T
Q  214 tgtagccagataaacatcaactcataaataccagaaatgcaactatatactacatactatatgctataactaatatgaatgatttttatcaccttgctct 313  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33184594 tgtagccagataaacatcaactcataaatacaagaaatgcaactatatactacatactatatgctataactaatatgaatgatttttatcaccttgctct 33184693  T
Q  314 aagattgatgcaaattctgtcccatagatccatgatttctctcccactaagaaatttggaaccaccttcaatgccattaagacataccaaatggccataa 413  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33184694 aagattggtgcaaattctgtcccatagatccatgatttctctcccactaagaaatttggaaccaccttcaatgccattaagacataccaaatggccataa 33184793  T
Q  414 ccattgcaatgaatcacaccatgtaatagatgactctgatcatcaagagcttcttcatttaagggtttat 483  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33184794 ccattgcaatgaatcacaccatgtaatagatgactctgatcatcaagagcttcttcatttaagggtttat 33184863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0482 (Bit Score: 161; Significance: 1e-85; HSPs: 4)
Name: scaffold0482
Description:

Target: scaffold0482; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 14 - 202
Target Start/End: Original strand, 733 - 921
Alignment:
Q  14 aatatcatcaagaactaatgaaccaagagtttcaatagcttcatcatagttttgttctgtcacaccaaagcttccacggcaaaaaccataaccccatcta 113  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  733 aatatcatcaagaactaatgaaccaagagtttcaatagcttcattatagttttgttctgtcacaccaaagcttccacggcaaaaaccataaccccaccta 832  T
Q  114 ccaaaccaagagtgaccataagcaactccatgaagtaagcgaagatccattgaccttttccttgaagcatcttcaactgcaatgtacct 202  Q
    ||||| |||||||||||||||||||||| ||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  833 ccaaaacaagagtgaccataagcaactcaatgaaataagcgaagatacactgaccttttccttgaagcatcttcaactgcaatgtacct 921  T

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Target: scaffold0482; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 387 - 436
Target Start/End: Original strand, 971 - 1020
Alignment:
Q  387 ccattaagacataccaaatggccataaccattgcaatgaatcacaccatg 436  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  971 ccattaagacataccaaatggccataaccattgcaatgaatcacaccatg 1020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0482; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 450 - 483
Target Start/End: Original strand, 1019 - 1052
Alignment:
Q  450 tgatcatcaagagcttcttcatttaagggtttat 483  Q
    ||||||||||||||||||||||||||||||||||    
T  1019 tgatcatcaagagcttcttcatttaagggtttat 1052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0482; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 365
Target Start/End: Original strand, 918 - 979
Alignment:
Q  304 accttgctctaagattgatgcaaattctgtcccatagatccatgatttctctcccactaaga 365  Q
    ||||||||| ||||||| ||| ||||  || |||||||||||||||| |||||||| |||||    
T  918 accttgctccaagattggtgctaatttggttccatagatccatgattcctctcccattaaga 979  T

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Target: chr8 (Bit Score: 161; Significance: 1e-85; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 14 - 202
Target Start/End: Complemental strand, 7791180 - 7790992
Alignment:
Q  14 aatatcatcaagaactaatgaaccaagagtttcaatagcttcatcatagttttgttctgtcacaccaaagcttccacggcaaaaaccataaccccatcta 113  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  7791180 aatatcatcaagaactaatgaaccaagagtttcaatagcttcattatagttttgttctgtcacaccaaagcttccacggcaaaaaccataaccccaccta 7791081  T
Q  114 ccaaaccaagagtgaccataagcaactccatgaagtaagcgaagatccattgaccttttccttgaagcatcttcaactgcaatgtacct 202  Q
    ||||| |||||||||||||||||||||| ||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  7791080 ccaaaacaagagtgaccataagcaactcaatgaaataagcgaagatacactgaccttttccttgaagcatcttcaactgcaatgtacct 7790992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 14 - 202
Target Start/End: Complemental strand, 7811765 - 7811577
Alignment:
Q  14 aatatcatcaagaactaatgaaccaagagtttcaatagcttcatcatagttttgttctgtcacaccaaagcttccacggcaaaaaccataaccccatcta 113  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  7811765 aatatcatcaagaactaatgaaccaagagtttcaatagcttcattatagttttgttctgtcacaccaaagcttccacggcaaaaaccataaccccaccta 7811666  T
Q  114 ccaaaccaagagtgaccataagcaactccatgaagtaagcgaagatccattgaccttttccttgaagcatcttcaactgcaatgtacct 202  Q
    ||||| |||||||||||||||||||||| ||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  7811665 ccaaaacaagagtgaccataagcaactcaatgaaataagcgaagatacactgaccttttccttgaagcatcttcaactgcaatgtacct 7811577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 14 - 202
Target Start/End: Complemental strand, 7774533 - 7774345
Alignment:
Q  14 aatatcatcaagaactaatgaaccaagagtttcaatagcttcatcatagttttgttctgtcacaccaaagcttccacggcaaaaaccataaccccatcta 113  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||    
T  7774533 aatatcatcaagaactaatgaaccaagagtttcaatagcttcattatagttttgttctgtcacaccaaagcttccacgacaaaaaccataaccccaccta 7774434  T
Q  114 ccaaaccaagagtgaccataagcaactccatgaagtaagcgaagatccattgaccttttccttgaagcatcttcaactgcaatgtacct 202  Q
    ||||| ||||||||| |||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  7774433 ccaaaacaagagtgaacataagcaactcaatgaaataagcgaagatacattgaccttttccttgaagcatcttcaactgcaatgtacct 7774345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 387 - 436
Target Start/End: Complemental strand, 7774295 - 7774246
Alignment:
Q  387 ccattaagacataccaaatggccataaccattgcaatgaatcacaccatg 436  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7774295 ccattaagacataccaaatggccataaccattgcaatgaatcacaccatg 7774246  T

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Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 387 - 436
Target Start/End: Complemental strand, 7790942 - 7790893
Alignment:
Q  387 ccattaagacataccaaatggccataaccattgcaatgaatcacaccatg 436  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7790942 ccattaagacataccaaatggccataaccattgcaatgaatcacaccatg 7790893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 387 - 436
Target Start/End: Complemental strand, 7811527 - 7811478
Alignment:
Q  387 ccattaagacataccaaatggccataaccattgcaatgaatcacaccatg 436  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7811527 ccattaagacataccaaatggccataaccattgcaatgaatcacaccatg 7811478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 450 - 483
Target Start/End: Complemental strand, 7774247 - 7774214
Alignment:
Q  450 tgatcatcaagagcttcttcatttaagggtttat 483  Q
    ||||||||||||||||||||||||||||||||||    
T  7774247 tgatcatcaagagcttcttcatttaagggtttat 7774214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 450 - 483
Target Start/End: Complemental strand, 7790894 - 7790861
Alignment:
Q  450 tgatcatcaagagcttcttcatttaagggtttat 483  Q
    ||||||||||||||||||||||||||||||||||    
T  7790894 tgatcatcaagagcttcttcatttaagggtttat 7790861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 450 - 483
Target Start/End: Complemental strand, 7811479 - 7811446
Alignment:
Q  450 tgatcatcaagagcttcttcatttaagggtttat 483  Q
    ||||||||||||||||||||||||||||||||||    
T  7811479 tgatcatcaagagcttcttcatttaagggtttat 7811446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 304 - 365
Target Start/End: Complemental strand, 7811580 - 7811519
Alignment:
Q  304 accttgctctaagattgatgcaaattctgtcccatagatccatgatttctctcccactaaga 365  Q
    ||||||||||||||||| ||| ||||  || |||||||||||||||| |||||||| |||||    
T  7811580 accttgctctaagattggtgctaatttggttccatagatccatgattcctctcccattaaga 7811519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 365
Target Start/End: Complemental strand, 7774348 - 7774287
Alignment:
Q  304 accttgctctaagattgatgcaaattctgtcccatagatccatgatttctctcccactaaga 365  Q
    ||||||||| ||||||| ||| ||||  || |||||||||||||||| |||||||| |||||    
T  7774348 accttgctccaagattggtgctaatttggttccatagatccatgattcctctcccattaaga 7774287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 365
Target Start/End: Complemental strand, 7790995 - 7790934
Alignment:
Q  304 accttgctctaagattgatgcaaattctgtcccatagatccatgatttctctcccactaaga 365  Q
    ||||||||| ||||||| ||| ||||  || |||||||||||||||| |||||||| |||||    
T  7790995 accttgctccaagattggtgctaatttggttccatagatccatgattcctctcccattaaga 7790934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 378 - 422
Target Start/End: Complemental strand, 41147886 - 41147842
Alignment:
Q  378 ccttcaatgccattaagacataccaaatggccataaccattgcaa 422  Q
    ||||||||| |||||||||||| |||||| |||||||||||||||    
T  41147886 ccttcaatgtcattaagacatatcaaatgaccataaccattgcaa 41147842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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