View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17565_low_5 (Length: 426)
Name: NF17565_low_5
Description: NF17565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17565_low_5 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 17 - 426
Target Start/End: Original strand, 33090511 - 33090933
Alignment:
| Q |
17 |
caatcactgcatcttcatcctctctccagaagaattcatgcatcaaaaccacgttttcggagccccgaagaatgcgtaaagcggtgatttcccgtgatgc |
116 |
Q |
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| T |
33090511 |
caatcacagcatcttcatcctctctccagaagaactcatgcatgaaaaccacgttttcggagccccgaagaatgcgtaaagcggtgatttctcgtgatgc |
33090610 |
T |
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| Q |
117 |
tgattggtgatcgtggatttctttcaacgcgacgggtgttccgtcggagatacggcggccgctgtagacgtcggagtaggtgccggagccgatgtgggtg |
216 |
Q |
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| T |
33090611 |
tgattggtgatcgtggatttctttcaacgcgacgggtgttccgtcggagagacggcggccgctgtagacgtcggagtaggtgccggagccgatgtgggtg |
33090710 |
T |
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| Q |
217 |
atgatggagtgtttggttgtgatttcgggtcgggtatggatgctccaactttttgttggaggatccatgttcaatttaaatcaaatattgnnnnnnntta |
316 |
Q |
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| T |
33090711 |
aagatggagtatttggttgtgatttcgggtcgggtatggatgctccaactttttgttggaggatccatgttcaattt-tctcaaatattgaaaaaaatta |
33090809 |
T |
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| Q |
317 |
attat----------------aaggagaaattttgggttttggagaatttttgtgaatggggtgtgtgactttcaacttttaacactctttgatttctct |
400 |
Q |
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| T |
33090810 |
attataacaaaatgaaaataaaagaagaaattttgagttttggagaatttttgtgaat--ggtgtgtgactttcaacttttaacactctttgatttctct |
33090907 |
T |
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| Q |
401 |
ttgggttttcaactctttatgttatt |
426 |
Q |
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| T |
33090908 |
ttgggttttcaactctttatgttatt |
33090933 |
T |
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