View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17565_low_6 (Length: 421)
Name: NF17565_low_6
Description: NF17565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17565_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 16 - 403
Target Start/End: Original strand, 10462424 - 10462811
Alignment:
| Q |
16 |
cacagaaagaaaatgaatcatttaatatatttgctaacagtagtaagaggaagaaaaatactatatctttgttatccttcctaggaaataattaatatta |
115 |
Q |
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| T |
10462424 |
cacagaaagaaaatgaatcatttaatatatttgctaacagtagtaagaggaagaaaaatactatatctttgttatccttcctaggaaataattaatatta |
10462523 |
T |
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| Q |
116 |
tcaatatcagacaaatggtaataggtgtagccgatcaggatttaatatcatgtgtgcctaaaaaggtcaaaattacaactccnnnnnnnnnnnnnnnnnn |
215 |
Q |
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| T |
10462524 |
tcaatatcagacaaatggtaataggtgtagccgatcaggatttaatatcatgtgtgcctaaaaaggtcaaaattacaactccaaaatataaataaataaa |
10462623 |
T |
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| Q |
216 |
nnnnnnggccagcttgcataaatcagggagggagaatacaaaaaactattcttccacatacaaaaaactggacttatcaattttagtgttcggctatatg |
315 |
Q |
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| T |
10462624 |
tatataggccagcttgcataaatcagggagggagaatacaaaaaactattcttccacatacaaaaaactggacttatcaattttagtgttcggctatatg |
10462723 |
T |
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| Q |
316 |
gaattgtaccggacaagaacaaaatatacaaatgttatggaattgtacccaattgttaaaaattcatcatgaaattcaactgataatt |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10462724 |
gaattgtaccggacaagaacaaaatatacaaatgttatggaattgtacccaattgttaaaaattcatcatgaaattcaactgataatt |
10462811 |
T |
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