View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17566_high_2 (Length: 311)
Name: NF17566_high_2
Description: NF17566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17566_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 9 - 304
Target Start/End: Complemental strand, 9670249 - 9669962
Alignment:
| Q |
9 |
ctatttgaaaatgcacacgttttttagatttgcatttaattcaatttattgataagtgtaaaagttggaccctatagttaacctagtatgcgacaagccg |
108 |
Q |
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| T |
9670249 |
ctatttgaaaatgcacacgttttttagatttgcatttaattaaatttattgataagtgtaaaagttggaccctatagttaacctagtatgcgaca----- |
9670155 |
T |
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| Q |
109 |
atacttccacttcccaagttagaatatgtgtaactcaatgcctaaaatattgaacagtttgtccataatctaatctgtctctctcataagatcgccttct |
208 |
Q |
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| T |
9670154 |
---cttccacttcccaagttagaatatgtgtaactcaatgcctaaaatattgaacagtttgtccataatctaatctgtctctctcataagatcgccttct |
9670058 |
T |
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| Q |
209 |
tatattctttttcgctttccatttacacacagcagcataactcatggcaggtacagcatgcaatgatctctctgaagatctaaggcttgtcctcct |
304 |
Q |
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| T |
9670057 |
tatattctttttcgctttccatttacacacaacagcataactcatggcaggtacagcatgcaatgatctctctgaagatctaaggcttgtcctcct |
9669962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 116 - 193
Target Start/End: Complemental strand, 9689454 - 9689377
Alignment:
| Q |
116 |
cacttcccaagttagaatatgtgtaactcaatgcctaaaatattgaacagtttgtccataatctaatctgtctctctc |
193 |
Q |
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| T |
9689454 |
cacttcccaagttagaatatgtgtaactcaatgcctaaaatatcgaaccgttgctccctaatctaatctctctttctc |
9689377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 107 - 142
Target Start/End: Complemental strand, 9671916 - 9671881
Alignment:
| Q |
107 |
cgatacttccacttcccaagttagaatatgtgtaac |
142 |
Q |
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| T |
9671916 |
cgatacttccacttcccaagttagaatatgtgtaac |
9671881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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