View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17566_low_1 (Length: 368)
Name: NF17566_low_1
Description: NF17566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17566_low_1 |
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| [»] scaffold0003 (2 HSPs) |
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Alignment Details
Target: scaffold0003 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 13 - 351
Target Start/End: Original strand, 229313 - 229650
Alignment:
| Q |
13 |
aatatacggaggagtattagctacggaacataaacctataaataatagaaacttcaatctttcagtcgaaaatcattggatattttcttcaagtgatttt |
112 |
Q |
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| T |
229313 |
aatattcggaggagtattagctacggaacataaacctataaataatagaaacttcaatctttcagtcgaaaatcattggatattttcttcaagtgatttt |
229412 |
T |
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| Q |
113 |
gatttctgaaaacaaaatcgattcctataaaaaacacgttaatcgatttacattgtacaacaaaattgttaaaaccctaataaccctttcttgtttcttg |
212 |
Q |
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| T |
229413 |
gatttctgaaaacaaaatcgattcctataaaaaacacgttaatcgatttacattgta-aacacaattgttaaaaccctaataaccctttcttgtttcttg |
229511 |
T |
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| Q |
213 |
aaccaacctagggttttggtttccactacagcatcaaaccatgtcactggggaaaattcaccgtctggagatacagaatttcaagtcatacaaaggttcc |
312 |
Q |
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| T |
229512 |
aaccaacctagggttttggtttccactacagcatcaaaccatgtcactggggaaaattcaccgtctggagatagagaatttcaagtcatacaaaggttcc |
229611 |
T |
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| Q |
313 |
caaatcatcggtcccttcgccggcttcacagccatcatc |
351 |
Q |
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| T |
229612 |
caaatcatcggtcccttcgccggcttcacagccatcatc |
229650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 197
Target Start/End: Original strand, 226656 - 226731
Alignment:
| Q |
121 |
aaaacaaaatcgattcctataaaaaacacgttaatcgatttacattgtacaacaaaattgttaaaaccctaataacc |
197 |
Q |
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|||||||||| ||||| |||||||| || || ||||||||||| ||||||||| |||| ||||| ||||||||||| |
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| T |
226656 |
aaaacaaaatagattcatataaaaag-acattgatcgatttacactgtacaacacaattattaaacccctaataacc |
226731 |
T |
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