View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17567_high_10 (Length: 355)
Name: NF17567_high_10
Description: NF17567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17567_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 114 - 346
Target Start/End: Original strand, 4843992 - 4844221
Alignment:
| Q |
114 |
agaatcaaactccttaatgatgtgaatccatgcaaacttgttatgatattacagtttagatcattataggaaaggtctaagacctccaactcctttgatc |
213 |
Q |
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||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
4843992 |
agaatcaaactccttaatgatatgaaaccatgcaaacttgttatgatattgcagtttagctcattataggaaaggtctaagacctccaactcctttgatc |
4844091 |
T |
|
| Q |
214 |
tcgaaaatccttcaacaatatacataatgaaaagcttttgttaattaatttcaattcctaccaccaatgattcataaccactttttcattttatttaaag |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
4844092 |
tcgaaaatccttcaacaatatacataatgaaaagcttttgttaattaatttcaattcct---accaatgattcataaccactttttcattttatttaaag |
4844188 |
T |
|
| Q |
314 |
tctcttattatcgttaaaaattaatattttctt |
346 |
Q |
| |
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|||||||| |||||||||||||||||||||||| |
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| T |
4844189 |
tctcttatcatcgttaaaaattaatattttctt |
4844221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 111 - 349
Target Start/End: Complemental strand, 5171686 - 5171451
Alignment:
| Q |
111 |
ctcagaatcaaactccttaatgatgtgaatccatgcaaacttgttatgatattacagtttagatcattataggaaaggtctaagacctccaactcctttg |
210 |
Q |
| |
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|||| ||||||||||||||||||| |||| |||| |||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||| |
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| T |
5171686 |
ctcaaaatcaaactccttaatgatatgaaaccatacaaacttgttatgatattgcagtttagctcattatgggaaaggtctaagacctccaactcctttg |
5171587 |
T |
|
| Q |
211 |
atctcgaaaatccttcaacaatatacataatgaaaagcttttgttaattaatttcaattcctaccaccaatgattcataaccactttttcattttattta |
310 |
Q |
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| T |
5171586 |
atctcgaaaatccttcaacaatatacataatgaaaagcttttgttaattaatttcaattcct---accaatgattcataaccagtttttcattttattta |
5171490 |
T |
|
| Q |
311 |
aagtctcttattatcgttaaaaattaatattttcttcga |
349 |
Q |
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| T |
5171489 |
aagtctcttattatcgttaaaaattaatattttcttcga |
5171451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 56 - 343
Target Start/End: Complemental strand, 5155161 - 5154863
Alignment:
| Q |
56 |
cattcatcataatataagaattgaagatgtgtacctaaag--------------ttgttgtaattgtaactcagaatcaaactccttaatgatgtgaatc |
141 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||| || ||||| ||||||||||||||||||||||||||||||| |
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| T |
5155161 |
cattcatcataatataagaattgaagatgtgtacctaaagtggagagagaacaattgaagttgttgtatctcagaatcaaactccttaatgatgtgaatc |
5155062 |
T |
|
| Q |
142 |
catgcaaacttgttatgatattacagtttagatcattataggaaaggtctaagacctccaactcctttgatctcgaaaatccttcaacaatatacataat |
241 |
Q |
| |
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|||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
5155061 |
catgcaaacttgttatgatattgcagttcagcccattataggaaaggtctaagacctccaactcctttgatctcaaaaatccttcaacaatatacataat |
5154962 |
T |
|
| Q |
242 |
gaaaagcttttgttaattaatttcaattcctaccaccaatgattcataaccactttttcattttatttaaagtctcttattatcgttaaaaattaatatt |
341 |
Q |
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| T |
5154961 |
gaaaagcttttgttaattaatttcaattcct---accaatgatttataaccagtttttcattttatttaaagtctcttattatcgttaataattaatatt |
5154865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 105 - 346
Target Start/End: Complemental strand, 5194322 - 5194081
Alignment:
| Q |
105 |
ttgtaactcagaatcaaactccttaatgatgtgaatccatgcaaacttgttatgatattacagtttagatcattataggaaaggtctaagacctccaact |
204 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| || || || ||||| ||| |||||||||||||| ||||||| |
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| T |
5194322 |
ttgtaactcagaatcaaactccttaatgatgtgaatccatgcaaacttgttattatgttgcaatttagcctatttcctgaaaggtctaagacttccaact |
5194223 |
T |
|
| Q |
205 |
cctttgatctcgaaaatccttcaacaatata----cataatgaaaagcttttgttaattaatttcaattcctaccaccaatgattcataaccactttttc |
300 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
5194222 |
cctttgatctcgaaaatccttcaacaatatatatacataatgaaaagcttttgttaattaatttcaattcctaccg---atgattcataaccactttttc |
5194126 |
T |
|
| Q |
301 |
attttatttaaagtctcttattatcgttaaaaattaatattttctt |
346 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
5194125 |
attttatttaaagtctcttattatcgttaaaaatt-atattttctt |
5194081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 238 - 346
Target Start/End: Complemental strand, 5180924 - 5180819
Alignment:
| Q |
238 |
taatgaaaagcttttgttaattaatttcaattcctaccaccaatgattcataaccactttttcattttatttaaagtctcttattatcgttaaaaattaa |
337 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
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| T |
5180924 |
taatgaaaagcttttgttaattaatttcaattcctacca---atgattcataaccagtttttcattttatttaaagtttcttattatcgttaaaaattaa |
5180828 |
T |
|
| Q |
338 |
tattttctt |
346 |
Q |
| |
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||||||||| |
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|
| T |
5180827 |
tattttctt |
5180819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 114 - 243
Target Start/End: Complemental strand, 5181116 - 5180987
Alignment:
| Q |
114 |
agaatcaaactccttaatgatgtgaatccatgcaaacttgttatgatattacagtttagatcattataggaaaggtctaagacctccaactcctttgatc |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||| || || || || ||| |||||||||||||| |||||||||||||||| |
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|
| T |
5181116 |
agaatcaaactccttaatgatgtgaatccatgcaaacttgatatgatgttgcaattcagcctatttcctgaaaggtctaagacttccaactcctttgatc |
5181017 |
T |
|
| Q |
214 |
tcgaaaatccttcaacaatatacataatga |
243 |
Q |
| |
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|||||||||||| ||||||||||||||||| |
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| T |
5181016 |
tcgaaaatccttgaacaatatacataatga |
5180987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 56 - 96
Target Start/End: Complemental strand, 5181188 - 5181148
Alignment:
| Q |
56 |
cattcatcataatataagaattgaagatgtgtacctaaagt |
96 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
5181188 |
cattcatcataatataagaattgaagatgtgtaccgaaagt |
5181148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 96
Target Start/End: Complemental strand, 5194385 - 5194345
Alignment:
| Q |
56 |
cattcatcataatataagaattgaagatgtgtacctaaagt |
96 |
Q |
| |
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||||| |||||||||||||||||||||||| |||||||||| |
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|
| T |
5194385 |
cattcgtcataatataagaattgaagatgtttacctaaagt |
5194345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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