View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17567_high_11 (Length: 355)
Name: NF17567_high_11
Description: NF17567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17567_high_11 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 49819710 - 49819357
Alignment:
| Q |
1 |
cctacaccaaatccaccatggttgatcaaaccacatcttacaacgatccaacctcttcagcacaaaaacatctcatagagtaaaaagtcaccactcaact |
100 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49819710 |
cctacaccaa-tccaccatggttgatcaaaccacatcttacaacgatccaacctcttcagcacaaaaacatctcatagagtaaaaagtcaccactcaact |
49819612 |
T |
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| Q |
101 |
acctatcaatcttaactctatcaactattttgtttggtacgtcaaaacagatccactatcttcttgttgctcgccatcttgttgaccatgtcatgaaagg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
49819611 |
acctatcaatcttaactctatcaactattttgtttggtacgtcaaaacagatccactatcttcttgttgctcgacatcttgttgaccatgtcatgaaagg |
49819512 |
T |
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| Q |
201 |
ataaagaaacttctaattgttacagtacaaatttctctacatggtctttcttggcccgtgtgatcccgaagttcgtgatgcactattttcatttcattga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49819511 |
ataaagaaacttctaattgttacagtacaaatttctcttcatggtctttcttggctcgtgtgatcccgaagttcgtgatgcactattttcatttcattga |
49819412 |
T |
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| Q |
301 |
gcctttagcaacaagtctcgttcttgaattatgtctttgaaggagcgacttagct |
355 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49819411 |
gcctttagcaacaagtctcgttcttgaattatgtctttgaaggagcgacttagct |
49819357 |
T |
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