View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17567_high_14 (Length: 348)
Name: NF17567_high_14
Description: NF17567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17567_high_14 |
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| [»] scaffold0728 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 30613914 - 30614243
Alignment:
| Q |
1 |
tcaacatcaacctgcaacaccacatacaataataacaacctacattttactaccaactcctcctcccacacccgtaaacttctctccacttccacgcctc |
100 |
Q |
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|||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30613914 |
tcaacatcaatatgcaacaccacatataataataacaacctacattctactaccaactcctcctcccacacccgtaaacttctctccacttccacgcctc |
30614013 |
T |
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| Q |
101 |
ccccctcgtcccaccgcaagttaaatatttgtgccaccatgttgcatatttattttttgataaatcaaataaccgacgaaaacaaacctgaagaggaacg |
200 |
Q |
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||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
30614014 |
ccccctcgtcccaccccaagttaaatatttgcgccaccgtgttgcatatttattttctgataaatcaaataaccgacaaaaacgaacctgaagaggaacg |
30614113 |
T |
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| Q |
201 |
tcacctacctgttaatgttttattaacgaaaaaatttattaataaccaaatctctgcacagtattcttt-nnnnnnngtccatatacaagaataacagag |
299 |
Q |
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|| ||||||||||||| |||||||||| |||| ||||||||||||||||||||||| || |||||||| |||| |||||||||||||||||| |
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| T |
30614114 |
tcgcctacctgttaatattttattaacagaaaagtttattaataaccaaatctctgcgcaatattctttgaaaaaaagtccctatacaagaataacagag |
30614213 |
T |
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| Q |
300 |
accgcgaaacagaaacatgtaatgatgatg |
329 |
Q |
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| T |
30614214 |
acagcgaaacagaaacatgtaatgatgatg |
30614243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 10382781 - 10382713
Alignment:
| Q |
1 |
tcaacatcaacctgcaacaccacatacaataataacaacctacattttactaccaactcctcctcccac |
69 |
Q |
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| T |
10382781 |
tcaacattaacctgcaacaccacagttagtaataacaacctagattcccctaacaactcctcctcccac |
10382713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0728 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: scaffold0728
Description:
Target: scaffold0728; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 1529 - 1426
Alignment:
| Q |
1 |
tcaacatcaacctgcaacaccacatacaataataacaacctacattttactaccaactcctcctcccacacccgtaaacttc--tctccacttccacgcc |
98 |
Q |
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||||||| |||||||| ||| ||| |||||||||||||||||| | |||| || |||||||||||| ||||| |||||| |||||||||||| ||| |
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| T |
1529 |
tcaacattaacctgcagcacaacaatcaataataacaacctacactccactaacatttcctcctcccacgcccgt-aacttccttctccacttccatgcc |
1431 |
T |
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| Q |
99 |
tcccc |
103 |
Q |
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||||| |
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| T |
1430 |
tcccc |
1426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0728; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 6469 - 6366
Alignment:
| Q |
1 |
tcaacatcaacctgcaacaccacatacaataataacaacctacattttactaccaactcctcctcccacacccgtaaacttc--tctccacttccacgcc |
98 |
Q |
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||||||| |||||||| ||| ||| |||||||||||||||||| | |||| || |||||||||||| ||||| |||||| |||||||||||| ||| |
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| T |
6469 |
tcaacattaacctgcagcacaacaatcaataataacaacctacactccactaacatttcctcctcccacgcccgt-aacttccttctccacttccatgcc |
6371 |
T |
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| Q |
99 |
tcccc |
103 |
Q |
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||||| |
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| T |
6370 |
tcccc |
6366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 148 - 195
Target Start/End: Original strand, 25094760 - 25094807
Alignment:
| Q |
148 |
atttattttttgataaatcaaataaccgacgaaaacaaacctgaagag |
195 |
Q |
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| T |
25094760 |
atttattttctgataaaataaataagcgacgaaaacaaacctgaagag |
25094807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 113
Target Start/End: Original strand, 17620287 - 17620369
Alignment:
| Q |
33 |
taacaacctacattttactaccaactcctcctcccacacccgtaaacttct-ctccacttccacgcctc-ccccctcgtccca |
113 |
Q |
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| T |
17620287 |
taacaacctacactctgctaccaactccttctcccacgcccacaacctcctcctccacttccacgcctctccccctcgtccca |
17620369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 260
Target Start/End: Original strand, 13897204 - 13897252
Alignment:
| Q |
212 |
ttaatgttttattaacgaaaaaatttattaataaccaaatctctgcaca |
260 |
Q |
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||||| |||| ||||||| |||||||||||||||| |||| |||||||| |
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| T |
13897204 |
ttaatatttttttaacgataaaatttattaataactaaatatctgcaca |
13897252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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