View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17567_high_4 (Length: 400)
Name: NF17567_high_4
Description: NF17567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17567_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 31 - 392
Target Start/End: Original strand, 10194107 - 10194472
Alignment:
| Q |
31 |
atgtgttctataaccttataccagtagtacataatctggtattgcaatttgtcataaactgcatcgcatcaattgcattcactgcaacatggaacttatc |
130 |
Q |
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| T |
10194107 |
atgtgttctataaccttataccagtagtacataatctggtattgcaatttgtcataaact-----gaatcaattgcattcactgcaacatggaacttatc |
10194201 |
T |
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| Q |
131 |
aaaattttctgtccctaacaccattccaggcatcctgatatcaggatcaaggaattcgaactcatctgttactgaacatgccgcctaacagtgtttgatc |
230 |
Q |
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| T |
10194202 |
aaaattttctgtccctaacaccattccaggcatcctgatatcaggatcaaggaattcgaactcatctgttactgaacatgcagcctaacagtgtttgatc |
10194301 |
T |
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| Q |
231 |
ataaatcgcaaattataattgaca---------agaaaaccctaaaccgtataagtagtgatcggatcttttgcacttcgcttgtctttcatcatattta |
321 |
Q |
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| T |
10194302 |
ataaatcgcaaattataattgacaagaaaaaccagaaaaccctaaaccgtataagtagtgatcggatcttttgcacttcgcttgtctttcatcatattta |
10194401 |
T |
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| Q |
322 |
tctttaaatgcgttacttattcaaaatcgaatgctttgtttccaaaactcaagccagcacagttcatctca |
392 |
Q |
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| T |
10194402 |
tctttaaatgcgttacttattcaaaatagaatgctttgtttccaaaactcaagccagcacagctcatctca |
10194472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 323 - 392
Target Start/End: Complemental strand, 19459304 - 19459235
Alignment:
| Q |
323 |
ctttaaatgcgttacttattcaaaatcgaatgctttgtttccaaaactcaagccagcacagttcatctca |
392 |
Q |
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|||| |||||||||||| ||||||||| || ||||||||||||||||||||||||||||| |||||||| |
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| T |
19459304 |
ctttgaatgcgttacttgttcaaaatcaaactctttgtttccaaaactcaagccagcacagctcatctca |
19459235 |
T |
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