View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17567_high_5 (Length: 390)
Name: NF17567_high_5
Description: NF17567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17567_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-137; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 31 - 313
Target Start/End: Complemental strand, 1821058 - 1820775
Alignment:
| Q |
31 |
tatattagaaggaaggcgaagaaattttggtgttcagctcataaatcaaacctaaatcctttcaaataagtcatactttagtagagtttattaaccatta |
130 |
Q |
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| T |
1821058 |
tatattagaaggaaggcgaagaaattttggtgttcagctcataaatcaaacctaaatcctttcaaacaagtcatactttagtagagtttattaaccatta |
1820959 |
T |
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| Q |
131 |
agttcaatcatttacttatttaagaa-tattataatattaaaattttacgattccttctttatagatggacaaggcttcaatacttcgagaagcaattga |
229 |
Q |
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| T |
1820958 |
agttcaatcatttacttatttaagaaatattataatattaaaattttacgattccttctttatagatggacaaggcttcattacttcgagaagcgattga |
1820859 |
T |
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| Q |
230 |
ttatgtgaaacaacttaaagaacgtgttgaagaactcgagaaacaagacaaaaatgttgttgtcatgccggtgatggttctccg |
313 |
Q |
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| T |
1820858 |
ttatgtgaaacaacttaaagaacatgttgaagagctcgagaaacaagacaaaaatgttggtgtcacgccggtgatggttctccg |
1820775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 168 - 366
Target Start/End: Complemental strand, 1841184 - 1840971
Alignment:
| Q |
168 |
taaaattttacgattccttctttatagatggacaaggcttcaatacttcgagaagcaattgattatgtgaaacaacttaaagaacgtgttgaagaactcg |
267 |
Q |
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| T |
1841184 |
taaaattttaatattccatttttatagacagacaaggcttcaatacttcgagaagcaattgattatgtgaaacaacttaaagaacgtgttgatgagctcg |
1841085 |
T |
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| Q |
268 |
agaaacaagacaaaaatgttgttgtcatgccggtgatggttctcc---------------gtggaatcaataattacaatgaagacacaaattctggtga |
352 |
Q |
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| T |
1841084 |
agaaacaagacaaaaatgttggtgtcacgccggtgatggttctccggaaaccttattcatgtggaaacaataattacaatgaagacacgaattcgagtga |
1840985 |
T |
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| Q |
353 |
aacaagttgtgatg |
366 |
Q |
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| T |
1840984 |
aacaagttgtgatg |
1840971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 329 - 369
Target Start/End: Complemental strand, 1820753 - 1820713
Alignment:
| Q |
329 |
caatgaagacacaaattctggtgaaacaagttgtgatgatg |
369 |
Q |
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| T |
1820753 |
caatgaatacacaaattctggtgaaacaagttgtggtgatg |
1820713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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