View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17567_high_6 (Length: 376)
Name: NF17567_high_6
Description: NF17567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17567_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 13 - 364
Target Start/End: Original strand, 41743743 - 41744094
Alignment:
| Q |
13 |
aataagaaagaatatatttaataaaaagtttgttataaactcaacattttatcacttaataacgtaaatttttaaattatactttagcagtgcaactcta |
112 |
Q |
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| T |
41743743 |
aataagaaagaatatatttaataaaaagtatgttataaactcaacattttatcacttaataacgtaaatttttaaattatactttagcagtgcgactcta |
41743842 |
T |
|
| Q |
113 |
tccatatgcagatggacttcatcttaaaacatatatgaacgtggtaccacacatattgtcatcatatattgttgatagagatgtgttattggacttacat |
212 |
Q |
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| T |
41743843 |
tccatatgcagatggacttcatcttaagacatatatgaacgtggtatcacacatatcgtcatcatatattgttgatagagatgtgttactggacttacat |
41743942 |
T |
|
| Q |
213 |
ttgtctccatttcatcttcgttttcctagactcaactctatatgcatccatagagacaaactcatcaagtaatacgcatcttcacatcatcaataattca |
312 |
Q |
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| T |
41743943 |
ttgtcttcatttcatcttcgttttcctagactcgactctatatgcatgtatagagacaaactcatcaagtaatacacatcttcacatcatcaataattca |
41744042 |
T |
|
| Q |
313 |
catattaatgcaaaactctccctattatgtacaatgtcaagacaaacatatt |
364 |
Q |
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| T |
41744043 |
catattaatgcaaaactctccctattatgtacaatgtcaagacaaacatatt |
41744094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 116 - 325
Target Start/End: Original strand, 24621979 - 24622188
Alignment:
| Q |
116 |
atatgcagatggacttcatcttaaaacatatatgaacgtggtaccacacatattgtcatcatatattgttgatagagatgtgttattggacttacatttg |
215 |
Q |
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| T |
24621979 |
atatgcatattgactccatcctatgacatatatgaatgtagtaccacacctatcgtcatcataaattgttgtcagagatatgttactggatttacactcg |
24622078 |
T |
|
| Q |
216 |
tctccatttcatcttcgttttcctagactcaactctatatgcatccatagagacaaactcatcaagtaatacgcatcttcacatcatcaataattcacat |
315 |
Q |
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||| | ||||||||| ||||||||||||||||||||||||||| ||| |||| |||||||||||||||| ||| ||||||||||||| ||||||||| |
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| T |
24622079 |
tcttctcttcatcttctttttcctagactcaactctatatgcatgcatgaagaccgactcatcaagtaatacacattttcacatcatcaacaattcacat |
24622178 |
T |
|
| Q |
316 |
attaatgcaa |
325 |
Q |
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|||||||||| |
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| T |
24622179 |
attaatgcaa |
24622188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 127 - 358
Target Start/End: Complemental strand, 34635965 - 34635732
Alignment:
| Q |
127 |
gacttcatcttaaaacatatatgaacgtggtaccacacatatt-gtcatcatatattgttgat-agagatgtgttattggacttacatttgtctccattt |
224 |
Q |
| |
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||||||||| ||| || ||||| || |||||||||||| | || |||||||| ||||||| | |||||||||||| |||||||||||| |||| ||||| |
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| T |
34635965 |
gacttcatcctaagacctatataaatgtggtaccacaccttttcgtcatcat-tattgtttgtcagagatgtgttactggacttacattcgtcttcattt |
34635867 |
T |
|
| Q |
225 |
catcttcgtttt--cctagactcaactctatatgcatccatagagacaaactcatcaagtaatacgcatcttcacatcatcaataattcaca-tattaat |
321 |
Q |
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|||| || |||| ||||||| |||||||||||| || ||| ||||||||||||||||||| || || | ||| |||||||| |||||||| ||| ||| |
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| T |
34635866 |
catcctcattttttcctagacacaactctatatgtatgcatggagacaaactcatcaagtattaaacaccatcatatcatcaacaattcacattataaat |
34635767 |
T |
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| Q |
322 |
gcaaaactctccctattatgtacaatgtcaagacaaa |
358 |
Q |
| |
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|| |||||| | ||||||||||| | |||||||||| |
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| T |
34635766 |
gc--aactcttcttattatgtacattatcaagacaaa |
34635732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 191 - 285
Target Start/End: Complemental strand, 18785465 - 18785371
Alignment:
| Q |
191 |
agatgtgttattggacttacatttgtctccatttcatcttcgttttcctagactcaactctatatgcatccatagagacaaactcatcaagtaat |
285 |
Q |
| |
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|||||||||| |||||||||||| |||| |||||||||||| |||||||| |||||||| ||||||||| ||| ||||||||||||||||||||| |
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| T |
18785465 |
agatgtgttactggacttacattcgtcttcatttcatcttcattttcctaaactcaactttatatgcatgcatggagacaaactcatcaagtaat |
18785371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 272 - 358
Target Start/End: Original strand, 22521540 - 22521627
Alignment:
| Q |
272 |
actcatcaagta-atacgcatcttcacatcatcaataattcacatattaatgcaaaactctccctattatgtacaatgtcaagacaaa |
358 |
Q |
| |
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|||||||||||| |||| | ||||||||| ||||| ||||||||||| ||||||| ||||| ||||||||| || | |||||||||| |
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| T |
22521540 |
actcatcaagtatatacacgtcttcacatgatcaacaattcacatatcaatgcaagactcttcctattatgcacgacatcaagacaaa |
22521627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 247 - 358
Target Start/End: Original strand, 19019617 - 19019729
Alignment:
| Q |
247 |
actctatatgcatccatagagacaaactcatcaagta-atacgcatcttcacatcatcaataattcacatattaatgcaaaactctccctattatgtaca |
345 |
Q |
| |
|
||||||||||||| || |||| ||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||| ||| | ||||||||| ||| |
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| T |
19019617 |
actctatatgcatgtatgaagactaactcatcaagtatatacacatcttcacatcatcaacaattcacatattaatgcaagactattcctattatgcaca |
19019716 |
T |
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| Q |
346 |
atgtcaagacaaa |
358 |
Q |
| |
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| T |
19019717 |
acatcaagacaaa |
19019729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 237 - 341
Target Start/End: Complemental strand, 33499810 - 33499706
Alignment:
| Q |
237 |
cctagactcaactctatatgcatccatagagacaaactcatcaagtaatacgcatcttcacatcatcaataattcacatattaatgcaaaactctcccta |
336 |
Q |
| |
|
|||||| |||||||||||||||| ||| |||||| |||| |||||||||| || | ||||||||||| ||||||||||||||||| | |||||||||| |
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| T |
33499810 |
cctagaatcaactctatatgcatgcatggagacatactcgacaagtaatacatatttgcacatcatcaacaattcacatattaatgctagactctcccta |
33499711 |
T |
|
| Q |
337 |
ttatg |
341 |
Q |
| |
|
|||| |
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|
| T |
33499710 |
atatg |
33499706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 225 - 322
Target Start/End: Complemental strand, 43155380 - 43155284
Alignment:
| Q |
225 |
catcttcgttttcctagactcaactctatatgcatccatagagacaaactcatcaagtaatacgcatcttcacatcatcaataattcacatattaatg |
322 |
Q |
| |
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||||||| ||||||||| |||||| ||| |||||| || |||||| ||||| |||||||||| | |||||||||||||| |||||||||||||||| |
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| T |
43155380 |
catcttctttttcctaggctcaaccctaaatgcatg-atggagacagactcaacaagtaatacacgccttcacatcatcaacaattcacatattaatg |
43155284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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