View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17568_high_6 (Length: 342)
Name: NF17568_high_6
Description: NF17568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17568_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 16 - 324
Target Start/End: Complemental strand, 38793390 - 38793090
Alignment:
| Q |
16 |
atgaaatgaaatgaagagaagagagaatggttttgagtttttaaaatgcgttgtgtttgttagtactttggaagctccggagtgtgagaatgttgttact |
115 |
Q |
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| T |
38793390 |
atgaaatgaaatgaagagaagagagaatggttttgagtttttaaaatgcgttgtgtttgttagtactttggaagctccggagtgtgagaatgttgttact |
38793291 |
T |
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| Q |
116 |
gagtggacggtacaaacgatgtgtgtgaatgttgtgtagtttcagtaggtgagctgagctgtgaagcttagtaatggccataagcccataatagtgtgcc |
215 |
Q |
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| T |
38793290 |
gagtggacggtacaaacgatgtgtgtgaatgttgtgtagtttcagtaggtgagctgagctgtgaagcttagtaatggcc--------ataatagtgtgcc |
38793199 |
T |
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| Q |
216 |
atatgctacaaagggtacatatgtaaattccactcctttttactttttgatgtcataagttcaaaatacatgatattttacacaaatttcatgtatataa |
315 |
Q |
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| T |
38793198 |
atatgctacaaagggtacatatgtaaattccactcctttttactttttgatgtcataagttcaaaatacatgatattttacacaaatttcatgtatataa |
38793099 |
T |
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| Q |
316 |
tagatatat |
324 |
Q |
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| T |
38793098 |
tagatatat |
38793090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 128
Target Start/End: Complemental strand, 46495997 - 46495908
Alignment:
| Q |
37 |
agagaatggttttgagtttttaaaatgcgttgtgtttgttagtactttggaagctccggagtgtgagaatgttgttactgagtggacggtac |
128 |
Q |
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| T |
46495997 |
agagaatggttttgagtttttaaaatgtg--gtgttggttagtgctttggaagctccagattgtgagaaagttgttattgagtggacggtac |
46495908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 37 - 105
Target Start/End: Original strand, 13876272 - 13876338
Alignment:
| Q |
37 |
agagaatggttttgagtttttaaaatgcgttgtgtttgttagtactttggaagctccggagtgtgagaa |
105 |
Q |
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| T |
13876272 |
agagaatggttttcagtttttaaaat--gtggtgttggttagtgctttggaagctccagattgtgagaa |
13876338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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