View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17568_low_1 (Length: 418)
Name: NF17568_low_1
Description: NF17568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17568_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 20 - 408
Target Start/End: Complemental strand, 37495479 - 37495091
Alignment:
| Q |
20 |
gtttagtggtcgctcaaaagaggatcatagtcatatgcttcacctgctttaacaaatctacctttcacacgttttcttgtatcagcccttgctttgcgag |
119 |
Q |
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| T |
37495479 |
gtttagtggtcgctcaaaagaggatcatagtcatatgcttcacctgctttaacaaatctacctttcacacgttttcttgtatcagcccttgctttgcgag |
37495380 |
T |
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| Q |
120 |
acgcatatcttatttgcttaccaaacctgatttgttgtaccaagtcaacttataaatttaagaatcatatgatagttaacgcttgatgagttgttaactt |
219 |
Q |
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| T |
37495379 |
acgcatatcttatttgcttaccaaacctgatttgttgtaccaagtcaacttataaatttacgaatcatatgatagttaacgctcgatgagttgttaactt |
37495280 |
T |
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| Q |
220 |
tagaatcatatgatagttaacacagtccaaataactgttagcactctaattcacttatttatgttttacagtattattatacaatagagaataaacttca |
319 |
Q |
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| T |
37495279 |
tagaatcatatgatagttaacacagtccaaataactgttagcactctaattcacttatttatgttttacagtattattatacaatagagaataaacttca |
37495180 |
T |
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| Q |
320 |
atacacatttatatataatgcaggaagaaacaaagaaaataacaaaatagttctagatttgtagacacttctaatgacttcagcctatg |
408 |
Q |
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| T |
37495179 |
atacacatttatatataatgcaggaagaaacaaagaaaataacaaaatagttctagatttgtagacacttctaatgacttcagcctatg |
37495091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 80 - 147
Target Start/End: Complemental strand, 29461890 - 29461823
Alignment:
| Q |
80 |
cctttcacacgttttcttgtatcagcccttgctttgcgagacgcatatcttatttgcttaccaaacct |
147 |
Q |
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| T |
29461890 |
cctttcacacgttttctgacatcagcccttgccttccgagaagcatatcttactttcttatcaaacct |
29461823 |
T |
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