View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17568_low_3 (Length: 397)

Name: NF17568_low_3
Description: NF17568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17568_low_3
NF17568_low_3
[»] chr8 (11 HSPs)
chr8 (162-379)||(10404856-10405063)
chr8 (10-82)||(10404265-10404337)
chr8 (167-265)||(38082195-38082294)
chr8 (167-249)||(15081454-15081535)
chr8 (167-265)||(2262628-2262725)
chr8 (201-249)||(9295250-9295298)
chr8 (197-265)||(22512155-22512224)
chr8 (177-261)||(12310755-12310838)
chr8 (184-265)||(18180792-18180873)
chr8 (202-265)||(22921959-22922023)
chr8 (177-241)||(37490848-37490910)
[»] chr1 (9 HSPs)
chr1 (167-263)||(50005237-50005332)
chr1 (184-264)||(45085645-45085726)
chr1 (177-258)||(28260269-28260349)
chr1 (200-249)||(13192935-13192984)
chr1 (184-265)||(40804558-40804640)
chr1 (181-258)||(11923788-11923863)
chr1 (208-268)||(12486331-12486392)
chr1 (201-249)||(50335811-50335860)
chr1 (186-265)||(50857553-50857634)
[»] chr6 (4 HSPs)
chr6 (167-249)||(27142601-27142682)
chr6 (186-265)||(2339157-2339237)
chr6 (181-257)||(8568707-8568781)
chr6 (202-268)||(19474728-19474795)
[»] chr4 (7 HSPs)
chr4 (167-265)||(54239490-54239587)
chr4 (167-265)||(15634545-15634644)
chr4 (188-265)||(38223136-38223213)
chr4 (201-242)||(18490424-18490465)
chr4 (186-265)||(13085201-13085280)
chr4 (181-249)||(34943575-34943642)
chr4 (174-265)||(6659439-6659531)
[»] chr2 (6 HSPs)
chr2 (184-259)||(5841205-5841278)
chr2 (186-265)||(8781414-8781493)
chr2 (174-265)||(27952427-27952520)
chr2 (174-265)||(27956263-27956356)
chr2 (185-265)||(33655525-33655608)
chr2 (232-265)||(44675330-44675363)
[»] chr7 (5 HSPs)
chr7 (200-261)||(32052957-32053018)
chr7 (175-265)||(22572497-22572585)
chr7 (184-268)||(4303347-4303433)
chr7 (207-265)||(32936869-32936926)
chr7 (232-265)||(31577291-31577324)
[»] chr5 (6 HSPs)
chr5 (200-267)||(15385061-15385128)
chr5 (167-265)||(35160836-35160932)
chr5 (201-265)||(36844439-36844503)
chr5 (181-258)||(7775315-7775390)
chr5 (167-265)||(19677239-19677338)
chr5 (174-265)||(40778895-40778988)
[»] scaffold0251 (1 HSPs)
scaffold0251 (168-265)||(8264-8361)
[»] scaffold0154 (1 HSPs)
scaffold0154 (214-265)||(28711-28762)
[»] chr3 (5 HSPs)
chr3 (201-261)||(1151119-1151179)
chr3 (230-265)||(20398508-20398543)
chr3 (174-265)||(4580453-4580543)
chr3 (201-265)||(5128824-5128889)
chr3 (232-265)||(43304069-43304102)


Alignment Details
Target: chr8 (Bit Score: 138; Significance: 5e-72; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 162 - 379
Target Start/End: Original strand, 10404856 - 10405063
Alignment:
Q  162 ccatcatttaaccagaactttcgtagcctaagaggcacttttttcattcaataaaattatcgagaacatttctcaattctggtggatttcgaaaaccctt 261  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||| |||||||||||    
T  10404856 ccatcatttaaccagagctttcgtagcctaagaggcacttttttcattcaataaaattatcgagaacatta--------tggtggattccgaaaaccctt 10404947  T
Q  262 atttaatccgtttatttttagatttagcgcttgctaatttctgcgtcatattattgtcattattttgactcggttccaaccttattagttaacttgtgta 361  Q
    |||||||   ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| |||     
T  10404948 atttaatggatttatttttaggtttagcgcttgctaatttctgcgtcatattattgtcattattttgactcggttccaaccttattagt--acttatgtg 10405045  T
Q  362 atgtcctcgtgagcttag 379  Q
    |||||||||||| |||||    
T  10405046 atgtcctcgtgaacttag 10405063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 10 - 82
Target Start/End: Original strand, 10404265 - 10404337
Alignment:
Q  10 ataatactttttgataatctaaatagggttcttttatggtaccaacttaaaaaatagggattggtctcgatat 82  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  10404265 ataatactttttgataatctaaatagggttctttcatggtaccaacttaaaaaatagggattggtctcgatat 10404337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 167 - 265
Target Start/End: Complemental strand, 38082294 - 38082195
Alignment:
Q  167 atttaaccagaactttcgtagcctaagaggcacttttttcattcaat-aaaattatcgagaacatttctcaattctggtggatttcgaaaacccttattt 265  Q
    |||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| | |||| |  ||||||||||||    
T  38082294 atttaaacataactttcgtagcctaagaggcacttttttcattcaataaaaattatcgagaacttttctcaattctgatagattcctgaaacccttattt 38082195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 167 - 249
Target Start/End: Original strand, 15081454 - 15081535
Alignment:
Q  167 atttaaccagaactttcgtagcctaagaggcacttttttcattcaataaaattatcgagaacatttctcaattctggtggatt 249  Q
    |||||| || ||||||||||| |||||||||| ||||| | ||||||||||||||||||||| |||||||||||| |||||||    
T  15081454 atttaaacaaaactttcgtagtctaagaggcagtttttcc-ttcaataaaattatcgagaacttttctcaattcttgtggatt 15081535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 167 - 265
Target Start/End: Original strand, 2262628 - 2262725
Alignment:
Q  167 atttaaccagaactttcgtagcctaagaggcacttttttcattcaataaaattatcgagaacatttctcaattctggtggatttcgaaaacccttattt 265  Q
    |||||| || ||||||||||| |||||| ||| |||| |||||||||||||| || |||||| |||||||||| | || |||| |||||||||||||||    
T  2262628 atttaaacataactttcgtagtctaagatgcagtttt-tcattcaataaaatcatggagaacttttctcaattttagtagattccgaaaacccttattt 2262725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 201 - 249
Target Start/End: Original strand, 9295250 - 9295298
Alignment:
Q  201 tttttcattcaataaaattatcgagaacatttctcaattctggtggatt 249  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  9295250 ttttacattcaataaaattatcgagaacttttctcaattctggtggatt 9295298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 265
Target Start/End: Complemental strand, 22512224 - 22512155
Alignment:
Q  197 cacttttttcattcaataaaattat-cgagaacatttctcaattctggtggatttcgaaaacccttattt 265  Q
    ||||||||| ||||||||||||||| |||||   | ||||||||||||||||||||| ||||||||||||    
T  22512224 cactttttttattcaataaaattattcgagattttctctcaattctggtggatttcggaaacccttattt 22512155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 177 - 261
Target Start/End: Original strand, 12310755 - 12310838
Alignment:
Q  177 aactttcgtagcctaagaggcacttttttcattcaataaaattatcgagaacatttctcaattctggtggatttcgaaaaccctt 261  Q
    ||||||||||||||||||||||  |||| |||||||||||| |||||| ||| ||||| || | ||||||| | |||||||||||    
T  12310755 aactttcgtagcctaagaggcaactttt-cattcaataaaaatatcgataacttttcttaaatttggtggactccgaaaaccctt 12310838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 265
Target Start/End: Complemental strand, 18180873 - 18180792
Alignment:
Q  184 gtagcctaagaggcacttttttcattcaataaaattat-cgagaacatttctcaattctggtggatttcgaaaacccttattt 265  Q
    |||||||||||||||||||||  ||||||||||||||| |||||   | ||||||||||||||||||  | ||||||||||||    
T  18180873 gtagcctaagaggcactttttg-attcaataaaattattcgagattttctctcaattctggtggattctggaaacccttattt 18180792  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 265
Target Start/End: Complemental strand, 22922023 - 22921959
Alignment:
Q  202 ttttcattcaataaaattat-cgagaacatttctcaattctggtggatttcgaaaacccttattt 265  Q
    |||| ||||||||||||||| |||||   | |||||||||||||||||| || ||||||||||||    
T  22922023 ttttgattcaataaaattattcgagattttctctcaattctggtggattccggaaacccttattt 22921959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 241
Target Start/End: Complemental strand, 37490910 - 37490848
Alignment:
Q  177 aactttcgtagcctaagaggcacttttttcattcaataaaattatcgagaacatttctcaattct 241  Q
    |||||||||| ||||||| ||| |||||||||||||||||| |||||| || ||||| |||||||    
T  37490910 aactttcgtaacctaagatgca-ttttttcattcaataaaa-tatcgaaaaaatttcgcaattct 37490848  T

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Target: chr1 (Bit Score: 61; Significance: 4e-26; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 167 - 263
Target Start/End: Complemental strand, 50005332 - 50005237
Alignment:
Q  167 atttaaccagaactttcgtagcctaagaggcacttttttcattcaataaaattatcgagaacatttctcaattctggtggatttcgaaaacccttat 263  Q
    |||||| |||||||||||||||||||||| ||| |||| ||||||||||||||||||||||| |||||||||| || |||||| |||||||||||||    
T  50005332 atttaaacagaactttcgtagcctaagagacacctttt-cattcaataaaattatcgagaacttttctcaattttgatggattccgaaaacccttat 50005237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 184 - 264
Target Start/End: Original strand, 45085645 - 45085726
Alignment:
Q  184 gtagcctaagaggcacttttttcattcaataaaattatcgagaacatttctc--aattctggtggatttcgaaaacccttatt 264  Q
    ||||||||||||||| ||||| ||||||||||| |||| |||||| ||||||  |||||||||||||||||||||| ||||||    
T  45085645 gtagcctaagaggcagttttt-cattcaataaacttattgagaacttttctctcaattctggtggatttcgaaaactcttatt 45085726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 177 - 258
Target Start/End: Complemental strand, 28260349 - 28260269
Alignment:
Q  177 aactttcgtagcctaagaggcacttttttcattcaataaaattatcgagaacatttctcaattctggtggatttcgaaaacc 258  Q
    |||||||||||||||| ||||| ||||  |||||||||||| |||||||||| ||| |||||||| ||||||| ||||||||    
T  28260349 aactttcgtagcctaaaaggcagttttg-cattcaataaaaatatcgagaacttttttcaattctagtggattccgaaaacc 28260269  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 200 - 249
Target Start/End: Complemental strand, 13192984 - 13192935
Alignment:
Q  200 ttttttcattcaataaaattatcgagaacatttctcaattctggtggatt 249  Q
    ||||||||||||||||| |||| |||||  ||||||||||||||||||||    
T  13192984 ttttttcattcaataaatttatagagaagttttctcaattctggtggatt 13192935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 184 - 265
Target Start/End: Original strand, 40804558 - 40804640
Alignment:
Q  184 gtagcctaagaggcacttttttcattcaataaaattatcgagaacatt-tctcaattctggtggatttcgaaaacccttattt 265  Q
    |||||||||||||||  ||||||||||||||| ||  ||||||   || ||||||||||||||||||| | |||||| |||||    
T  40804558 gtagcctaagaggcaactttttcattcaataatatattcgagacttttctctcaattctggtggattttggaaacccgtattt 40804640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 258
Target Start/End: Original strand, 11923788 - 11923863
Alignment:
Q  181 ttcgtagcctaagaggcacttttttcattcaataaaattatcgagaacatttctcaattctggtggatttcgaaaacc 258  Q
    ||||||||||||||| || ||||  ||||||||||||||||| || || ||||| |||||| ||||||| ||||||||    
T  11923788 ttcgtagcctaagagacagttttc-cattcaataaaattatctag-acttttcttaattctagtggattacgaaaacc 11923863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 268
Target Start/End: Complemental strand, 12486392 - 12486331
Alignment:
Q  208 ttcaataaaattat-cgagaacatttctcaattctggtggatttcgaaaacccttatttaat 268  Q
    |||||||||||||| |||||   | |||||||| ||||||||| ||||||||||||||||||    
T  12486392 ttcaataaaattattcgagattttctctcaattttggtggattccgaaaacccttatttaat 12486331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 249
Target Start/End: Original strand, 50335811 - 50335860
Alignment:
Q  201 tttttcattcaataaaattatcgagaacatttctcaa-ttctggtggatt 249  Q
    ||||||||| ||||||||||| |||||| |||||||| ||||||||||||    
T  50335811 tttttcatttaataaaattattgagaacttttctcaatttctggtggatt 50335860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 265
Target Start/End: Complemental strand, 50857634 - 50857553
Alignment:
Q  186 agcctaagaggcact-tttttcattcaataaaattat-cgagaacatttctcaattctggtggatttcgaaaacccttattt 265  Q
    ||||||||||||||  ||||| || |||||||||||| |||||   | |||||||||||||||||| || ||||||||||||    
T  50857634 agcctaagaggcacactttttgatacaataaaattattcgagattttctctcaattctggtggattccggaaacccttattt 50857553  T

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Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 167 - 249
Target Start/End: Complemental strand, 27142682 - 27142601
Alignment:
Q  167 atttaaccagaactttcgtagcctaagaggcacttttttcattcaataaaattatcgagaacatttctcaattctggtggatt 249  Q
    |||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||| |||||||||| |||||||||    
T  27142682 atttaaacagaactttcgtagcctaagaggcagttttt-cattcaataaaattatcgaaaacttttctcaattatggtggatt 27142601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 186 - 265
Target Start/End: Complemental strand, 2339237 - 2339157
Alignment:
Q  186 agcctaagaggcacttttttcattcaataaaattatcgagaacatt-tctcaattctggtggatttcgaaaacccttattt 265  Q
    |||||||||||||  ||||||||||||||||||||||||||   || ||||||||||||||||||||| ||||||||||||    
T  2339237 agcctaagaggcatctttttcattcaataaaattatcgagacttttctctcaattctggtggatttcggaaacccttattt 2339157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 257
Target Start/End: Complemental strand, 8568781 - 8568707
Alignment:
Q  181 ttcgtagcctaagaggcacttttttcattcaataaaattatcgagaacatttctcaattctggtggatttcgaaaac 257  Q
    ||||||||||||||| || ||||  ||||||||||||||||| || || ||||| |||||| ||||||| |||||||    
T  8568781 ttcgtagcctaagagacagttttc-cattcaataaaattatctag-acttttcttaattctagtggattccgaaaac 8568707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 268
Target Start/End: Complemental strand, 19474795 - 19474728
Alignment:
Q  202 ttttcattcaat-aaaattatcgagaacatttctc-aattctggtggatttcgaaaacccttatttaat 268  Q
    |||||||||||| |||||||||||  |  |||||| |||||| ||||||||||||||||||||||||||    
T  19474795 ttttcattcaataaaaattatcga-tatttttctcaaattctagtggatttcgaaaacccttatttaat 19474728  T

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Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 167 - 265
Target Start/End: Original strand, 54239490 - 54239587
Alignment:
Q  167 atttaaccagaactttcgtagcctaagaggcacttttttcattcaataaaattatcgagaacatttctcaattctggtggatttcgaaaacccttattt 265  Q
    |||||| || |||||| |||||||||||  || ||||| || |||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||    
T  54239490 atttaaacaaaactttggtagcctaagatacagttttt-caatcaataaaattatcgagaacttttctcaattttggtggattccgaaaacccttattt 54239587  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 167 - 265
Target Start/End: Original strand, 15634545 - 15634644
Alignment:
Q  167 atttaaccagaactttcgtagcctaagaggcactttt-ttcattcaataaaattatcgagaacatttctcaattctggtggatttcgaaaacccttattt 265  Q
    |||||| || ||||||||||| ||||||| ||||||| ||||||||||||||| ||||||||  |||||| |||||  |||||| | ||||| |||||||    
T  15634545 atttaaacataactttcgtagtctaagagacactttttttcattcaataaaataatcgagaaattttctctattctaatggattccaaaaactcttattt 15634644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 188 - 265
Target Start/End: Complemental strand, 38223213 - 38223136
Alignment:
Q  188 cctaagaggcacttttttcattcaat-aaaattatcgagaacatttctcaattctggtggatttcgaaaacccttattt 265  Q
    |||||||| ||||||||||||||||| |||||||||||| || |||||||||||| |||||||  | ||||||||||||    
T  38223213 cctaagagacacttttttcattcaataaaaattatcgag-acttttctcaattctagtggattctgtaaacccttattt 38223136  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 242
Target Start/End: Original strand, 18490424 - 18490465
Alignment:
Q  201 tttttcattcaataaaattatcgagaacatttctcaattctg 242  Q
    |||||||||||||||||||||||||||| |||||||||||||    
T  18490424 tttttcattcaataaaattatcgagaacttttctcaattctg 18490465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 186 - 265
Target Start/End: Complemental strand, 13085280 - 13085201
Alignment:
Q  186 agcctaagaggcacttttttcattcaataaaattat-cgagaacatttctcaattctggtggatttcgaaaacccttattt 265  Q
    |||||||||| ||||||||| ||||||||||||||| |||||   | |||||||| ||||||||| |||||||||||||||    
T  13085280 agcctaagagacactttttt-attcaataaaattattcgagattttctctcaattttggtggattccgaaaacccttattt 13085201  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 181 - 249
Target Start/End: Complemental strand, 34943642 - 34943575
Alignment:
Q  181 ttcgtagcctaagaggcacttttttcattcaataaaattatcgagaacatttctcaattctggtggatt 249  Q
    |||||||||||||||  | |||||| ||||||||||||||| |||||||||| |||||| |||||||||    
T  34943642 ttcgtagcctaagagaaaatttttt-attcaataaaattatagagaacatttatcaattttggtggatt 34943575  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 265
Target Start/End: Complemental strand, 6659531 - 6659439
Alignment:
Q  174 cagaactttcgtagcctaagaggcacttttttcattcaataaaattat-cgagaacatttctcaattctggtggatttcgaaaacccttattt 265  Q
    ||||||||  |||||||||||||||  ||||| ||||| ||||| ||| |||||   | |||||||||||||||||| || ||||||||||||    
T  6659531 cagaacttatgtagcctaagaggcaactttttgattcactaaaactattcgagattttctctcaattctggtggattccggaaacccttattt 6659439  T

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Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 184 - 259
Target Start/End: Original strand, 5841205 - 5841278
Alignment:
Q  184 gtagcctaagaggcacttttttcattcaataaaattatcgagaacatttctcaattctggtggatttcgaaaaccc 259  Q
    ||||||||||||  ||| ||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||    
T  5841205 gtagcctaagag--actattttcattcaataaaattatcgagaacttttctcaattcttgtggattccgaaaaccc 5841278  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 186 - 265
Target Start/End: Original strand, 8781414 - 8781493
Alignment:
Q  186 agcctaagaggcacttttttcattcaataaaatta-tcgagaacatttctcaattctggtggatttcgaaaacccttattt 265  Q
    ||||||||||||||||||||||||||||||||||| ||||||     ||||||||||||||||||||| ||||||||||||    
T  8781414 agcctaagaggcacttttttcattcaataaaattattcgagatttactctcaattctggtggatttcg-aaacccttattt 8781493  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 265
Target Start/End: Complemental strand, 27952520 - 27952427
Alignment:
Q  174 cagaactttcgtagcctaagaggcact-tttttcattcaataaaattat-cgagaacatttctcaattctggtggatttcgaaaacccttattt 265  Q
    ||||||||  ||||||||||||||||  ||||| ||||||||||||||| |||||   | |||||||||||||||||| || ||||||||||||    
T  27952520 cagaacttatgtagcctaagaggcacactttttgattcaataaaattattcgagattttctctcaattctggtggattccggaaacccttattt 27952427  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 265
Target Start/End: Complemental strand, 27956356 - 27956263
Alignment:
Q  174 cagaactttcgtagcctaagaggcact-tttttcattcaataaaattat-cgagaacatttctcaattctggtggatttcgaaaacccttattt 265  Q
    ||||||||  ||||||||||||||||  ||||| ||||||||||||||| |||||   | |||||||||||||||||| || ||||||||||||    
T  27956356 cagaacttatgtagcctaagaggcacactttttgattcaataaaattattcgagattttctctcaattctggtggattccggaaacccttattt 27956263  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 185 - 265
Target Start/End: Original strand, 33655525 - 33655608
Alignment:
Q  185 tagcctaagaggcact-tttttcattcaataaaatta-tcgagaacatttctcaa-ttctggtggatttcgaaaacccttattt 265  Q
    |||||||||||||||  |||||||||||||||||||| ||||||   | |||||| |||||||||||| || ||||||||||||    
T  33655525 tagcctaagaggcacactttttcattcaataaaattattcgagattttctctcaatttctggtggattccggaaacccttattt 33655608  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 265
Target Start/End: Complemental strand, 44675363 - 44675330
Alignment:
Q  232 tctcaattctggtggatttcgaaaacccttattt 265  Q
    |||||||||||||||||| |||||||||||||||    
T  44675363 tctcaattctggtggattccgaaaacccttattt 44675330  T

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Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 200 - 261
Target Start/End: Original strand, 32052957 - 32053018
Alignment:
Q  200 ttttttcattcaataaaattatcgagaacatttctcaattctggtggatttcgaaaaccctt 261  Q
    |||||||||||||||||||||| || ||| ||||||||||||||||||||||| ||||||||    
T  32052957 ttttttcattcaataaaattatagaaaacttttctcaattctggtggatttcggaaaccctt 32053018  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 175 - 265
Target Start/End: Complemental strand, 22572585 - 22572497
Alignment:
Q  175 agaactttcgtagcctaagaggcacttttttcattcaataaaattatcgagaacatttctcaattctggtggatttcgaaaacccttattt 265  Q
    |||||||| |||| |||||||||||||||  || | |||||||| ||||||||| |||||||||||| ||||||| || ||||||||||||    
T  22572585 agaactttggtagtctaagaggcactttt--caataaataaaataatcgagaacttttctcaattcttgtggattccggaaacccttattt 22572497  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 184 - 268
Target Start/End: Original strand, 4303347 - 4303433
Alignment:
Q  184 gtagcctaagaggcact-tttttcattcaataaaattat-cgagaacatttctcaattctggtggatttcgaaaacccttatttaat 268  Q
    ||||||||||||||||  ||||| ||||||||||||||| |||||   | |||||||||| ||||||| ||||||||||||||||||    
T  4303347 gtagcctaagaggcacactttttgattcaataaaattattcgagattttctctcaattctagtggattccgaaaacccttatttaat 4303433  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 207 - 265
Target Start/End: Complemental strand, 32936926 - 32936869
Alignment:
Q  207 attcaataaaattatcgagaacatttctcaattctggtggatttcgaaaacccttattt 265  Q
    |||||||||||||||||||||  |||||||||| ||||||||| |||||||||||||||    
T  32936926 attcaataaaattatcgagaat-tttctcaattatggtggattccgaaaacccttattt 32936869  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 265
Target Start/End: Complemental strand, 31577324 - 31577291
Alignment:
Q  232 tctcaattctggtggatttcgaaaacccttattt 265  Q
    ||||||||||||||||||||| ||||||||||||    
T  31577324 tctcaattctggtggatttcggaaacccttattt 31577291  T

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Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 200 - 267
Target Start/End: Complemental strand, 15385128 - 15385061
Alignment:
Q  200 ttttttcattcaataaaattatcgagaacatttctcaattctggtggatttcgaaaacccttatttaa 267  Q
    ||||||||||||||||||||||||||||| |||||||||| |  ||||||||| |||| |||||||||    
T  15385128 ttttttcattcaataaaattatcgagaacttttctcaattttaatggatttcggaaactcttatttaa 15385061  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 167 - 265
Target Start/End: Complemental strand, 35160932 - 35160836
Alignment:
Q  167 atttaaccagaactttcgtagcctaagaggcacttttttcattcaataaaattatcgagaacatttctcaattctggtggatttcgaaaacccttattt 265  Q
    |||||| ||||||||| |||| |||||||||  ||||  ||||||||||||||||||||||| ||||| |||||||||||| | |  ||||||||||||    
T  35160932 atttaaacagaactttggtagtctaagaggccgtttt--cattcaataaaattatcgagaacttttcttaattctggtggaatcctgaaacccttattt 35160836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 201 - 265
Target Start/End: Complemental strand, 36844503 - 36844439
Alignment:
Q  201 tttttcattcaataaaattatcgagaacatttctcaattctggtggatttcgaaaacccttattt 265  Q
    ||||||||| |||||||||||||||||| || ||| |||| | |||||| |||||||||||||||    
T  36844503 tttttcatttaataaaattatcgagaactttcctctattccgctggattccgaaaacccttattt 36844439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 181 - 258
Target Start/End: Original strand, 7775315 - 7775390
Alignment:
Q  181 ttcgtagcctaagaggcacttttttcattcaataaaattatcgagaacatttctcaattctggtggatttcgaaaacc 258  Q
    ||||||||||||||| || ||||| ||||||||||||||||| || || ||||| |||||| ||||||| ||||||||    
T  7775315 ttcgtagcctaagagaca-tttttccattcaataaaattatctag-acttttcttaattctagtggattccgaaaacc 7775390  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 167 - 265
Target Start/End: Complemental strand, 19677338 - 19677239
Alignment:
Q  167 atttaaccagaactttcgtagcctaagaggcacttttttcattcaataaaattatcgagaacatt-tctcaattctggtggatttcgaaaacccttattt 265  Q
    |||||| ||||||||  | | ||||||||||||  |||  ||||||||||||  ||||||   || |||||||||||||||||| |||||||||||||||    
T  19677338 atttaaacagaacttatgcatcctaagaggcacactttgtattcaataaaatattcgagacttttctctcaattctggtggattccgaaaacccttattt 19677239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 265
Target Start/End: Complemental strand, 40778988 - 40778895
Alignment:
Q  174 cagaactttcgtagcctaagaggcact-tttttcattcaataaaattat-cgagaacatttctcaattctggtggatttcgaaaacccttattt 265  Q
    ||||||||  |||| |||||||||||  ||||| ||||||||||||||| |||||   | |||||||||||||||||| |  ||||||||||||    
T  40778988 cagaacttatgtagtctaagaggcacactttttgattcaataaaattattcgagattttctctcaattctggtggattccagaaacccttattt 40778895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 168 - 265
Target Start/End: Complemental strand, 8361 - 8264
Alignment:
Q  168 tttaaccagaactttcgtagcctaagaggcacttttttcattcaataaaattatcgagaac-atttctcaattctggtggatttcgaaaacccttattt 265  Q
    ||||| |||||||||||||||||||||| ||| ||||||||||||| ||||| |||||| |  ||||||||||||| |||||| |  ||||||||||||    
T  8361 tttaaacagaactttcgtagcctaagagacac-tttttcattcaatcaaattttcgagatctttttctcaattctgatggattccagaaacccttattt 8264  T

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Target: scaffold0154 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 214 - 265
Target Start/End: Complemental strand, 28762 - 28711
Alignment:
Q  214 aaaattatcgagaacatttctcaattctggtggatttcgaaaacccttattt 265  Q
    ||||||||||||||| ||||||||||||||| |||| || ||||||||||||    
T  28762 aaaattatcgagaacttttctcaattctggtagattccggaaacccttattt 28711  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 201 - 261
Target Start/End: Original strand, 1151119 - 1151179
Alignment:
Q  201 tttttcattcaataaaa-ttatcgagaacatttctcaattctggtggatttcgaaaaccctt 261  Q
    ||||||||||||||||| |||| |||| | |||||||||||||||||||| |||||||||||    
T  1151119 tttttcattcaataaaaattatagaga-cttttctcaattctggtggattccgaaaaccctt 1151179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 230 - 265
Target Start/End: Complemental strand, 20398543 - 20398508
Alignment:
Q  230 tttctcaattctggtggatttcgaaaacccttattt 265  Q
    |||||||||||||||||||| |||||||||||||||    
T  20398543 tttctcaattctggtggattccgaaaacccttattt 20398508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 265
Target Start/End: Original strand, 4580453 - 4580543
Alignment:
Q  174 cagaactttcgtagcctaagaggcacttttttcattcaataaaattatcgagaacatt-tctcaattctggtggatttcgaaaacccttattt 265  Q
    ||||||||| | ||| ||||| ||||||||  |||||||||||||  |||||||  || |||||||||| |||||||  ||||||||||||||    
T  4580453 cagaacttttgcagcgtaagatgcactttt--cattcaataaaatattcgagaattttctctcaattctagtggattctgaaaacccttattt 4580543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 265
Target Start/End: Original strand, 5128824 - 5128889
Alignment:
Q  201 tttttcattcaataaaattat-cgagaacatttctcaattctggtggatttcgaaaacccttattt 265  Q
    ||||| ||||||||||||||| |||||   | |||||||||||||||||| || ||||||||||||    
T  5128824 tttttgattcaataaaattattcgagattttctctcaattctggtggattccggaaacccttattt 5128889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 265
Target Start/End: Complemental strand, 43304102 - 43304069
Alignment:
Q  232 tctcaattctggtggatttcgaaaacccttattt 265  Q
    ||||||||||||||||||||| ||||||||||||    
T  43304102 tctcaattctggtggatttcggaaacccttattt 43304069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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