View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17568_low_5 (Length: 362)
Name: NF17568_low_5
Description: NF17568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17568_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 24 - 354
Target Start/End: Original strand, 17996042 - 17996372
Alignment:
| Q |
24 |
aataacaccaagctagatggctattgtgaactggatcaatatccttcatacattcaatatgcaggagcatctttatgtctcccatctctgtgactttaac |
123 |
Q |
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| T |
17996042 |
aatatcaccaagctagatggctattgcgaaccgggtcaatatccttcataccttcaatatgcaaaagcatctttctgtctcccatctctatgactttaac |
17996141 |
T |
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| Q |
124 |
accttgaatgccttccataaccaaagcttgttgcacctccaaaacatcattatgatggaacagttcccctataaaggcccactgcaaatagtccagcata |
223 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||| ||||||| ||||||||||||||| ||||| |
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| T |
17996142 |
acctcgaatgccttccataaccaaagcttgttgcacctccaaagcatccttctgatggaacagttcccccataaaggtccactgcaaatagtctagcatc |
17996241 |
T |
|
| Q |
224 |
tcctccgatggaagaatttccaatgttggagaaaccccattcataaccggaaaattatccttctccaacgtcaacgcatttttgaacgatttccccggag |
323 |
Q |
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|||| |||||||| ||||||||||||||||| ||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
17996242 |
tccttcgatggaacaatttccaatgttggagcaaccccattcaaaatcggaaaattatccttttccaacgtcaacgcatttttgaacgatttccccggag |
17996341 |
T |
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| Q |
324 |
tagcggtgacgccaaagccttcctccgcctc |
354 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
17996342 |
tagcggtgacgccaaagccttcctccgcctc |
17996372 |
T |
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