View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17568_low_6 (Length: 354)
Name: NF17568_low_6
Description: NF17568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17568_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 145 - 341
Target Start/End: Original strand, 36283154 - 36283350
Alignment:
| Q |
145 |
tctctttggacacttactaattctcttcatttcccagaaaattgtccaacaagaaataactttgttcaaattgtgaaaagtgtcttagctcaaagaaaac |
244 |
Q |
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| T |
36283154 |
tctctttggacacttactaattctcttcatttcccagaaaattgtccaacaagaaataactttgttcaaattgtgaaaagtgtcttagctcaaagaaaac |
36283253 |
T |
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| Q |
245 |
caagttgtatgaaaagagtttcattctctatccacaataactgttatatcccacacttggttagttcaatagtttgcatggcaagtaaacaaaaagt |
341 |
Q |
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| T |
36283254 |
caagttgtatgaaaagagtttcattctctatccacaataactgttatatcccacacttggttagttcaatagtttgcatggcaagtaaacaaaaagt |
36283350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 202 - 341
Target Start/End: Original strand, 34553944 - 34554083
Alignment:
| Q |
202 |
aactttgttcaaattgtgaaaagtgtcttagctcaaagaaaaccaagttgtatgaaaagagtttcattctctatccacaataactgttatatcccacact |
301 |
Q |
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| T |
34553944 |
aactttgttgatattatgaacagtgtcctatctcaaagggaatcaaaatgcatcaaaagactttccttctctatcctcaacaactgttatatccctcact |
34554043 |
T |
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| Q |
302 |
tggttagttcaatagtttgcatggcaagtaaacaaaaagt |
341 |
Q |
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| T |
34554044 |
tggttagttcaatagtttccatggcaactactcaaaaagt |
34554083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 48 - 145
Target Start/End: Original strand, 7525565 - 7525660
Alignment:
| Q |
48 |
ccatttgtgtttg-gttttccttgtgaattggaatagggtttttattgtgtgatttgtgaattattattattcactttgtgacaagttgaaattgtgat |
145 |
Q |
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| T |
7525565 |
ccatttgtgtgtgagttttccttatgaattggaatagggtttttattgtgtgatttgtga---attattattcactttgtgacaagtagaaattgtgat |
7525660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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