View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17568_low_9 (Length: 240)
Name: NF17568_low_9
Description: NF17568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17568_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 9630294 - 9630068
Alignment:
| Q |
1 |
tctgagccatctccaacttcttcagcttcttcgatcaacgacaacatcaacgaacttgtcggaaattcaacgtcttcggttgctgatgttgaggttaagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
9630294 |
tctgagccatctccaacttcttcagcttcttcgatcaacgacaacatcaacgaacttgtcggaaattcaacgtctttggttgctgatgttgaggttaagt |
9630195 |
T |
|
| Q |
101 |
tttgtggttcacatgtgcttttgaaaaccgtttcgtcgcgaattccggggcaggctcttagaataatgtctgttcttgaagatctaaggcttgagattgt |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9630194 |
tttgtggttcacatgtgcttttgaaaaccgtttcgtcacgaattccggggcaggctcttagaataatgtctgttcttgaagatctaaggcttgagattgt |
9630095 |
T |
|
| Q |
201 |
tcatgttagagttaatactgctgatga |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
9630094 |
tcatgttagagttaatactgctgatga |
9630068 |
T |
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