View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17569_high_14 (Length: 403)
Name: NF17569_high_14
Description: NF17569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17569_high_14 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 354; Significance: 0; HSPs: 15)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 11 - 384
Target Start/End: Complemental strand, 4847041 - 4846668
Alignment:
| Q |
11 |
tccaagaatatgtttgtactcttaacgtcacgatgtatgatattgtgcttcgcaccttcatgaagataattcaacccccttgctgcacctaatagaatct |
110 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4847041 |
tccaacaatatgtttgtactcttaacgtcacgatgtatgatattgtgcttcgcaccttcatgaagataattcaacccccttgctgcacctaatagaatct |
4846942 |
T |
|
| Q |
111 |
cgagtctttgattccacctaagaggttcattatccgaaccatagagatgttcactgagagggccacgttgcatgaagtcataaactagaatcatctctgc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4846941 |
cgagtctttgattccacctaagaggttcattatccgaaccatagagatgttcactgagagtaccacgttgcatgaagtcataaactagaatcatctctgc |
4846842 |
T |
|
| Q |
211 |
atcttcgttgcaatatccaatgagggaaaccaagtgaatatgacgaagctgagagagcatctcgatttcattcatgaattcatttagaccttgtcgagaa |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
4846841 |
atcttcgttgcaatatccaatgagggaaaccaagtgaatatgacgaagctgagagagcatctcgatttcattcatgaattcatttagaccttatcgagaa |
4846742 |
T |
|
| Q |
311 |
cccggtttacgacgttttatcgcaacaggtgtgagtccatcgatgtaacctttgtacacgttgccgaaccctcc |
384 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
4846741 |
cccggtttacgacgttttatcgcaacaggtgtgagtccattgatgtaacctttgtacacgttgccgaaccctcc |
4846668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 11 - 384
Target Start/End: Complemental strand, 4713086 - 4712713
Alignment:
| Q |
11 |
tccaagaatatgtttgtactcttaacgtcacgatgtatgatattgtgcttcgcaccttcatgaagataattcaacccccttgctgcacctaatagaatct |
110 |
Q |
| |
|
||||| ||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||| ||||||||| | |
|
|
| T |
4713086 |
tccaacaatatatttgtactcttaacgtcacggtgtatgatattatgcttcgcaccttcatgaagataatgcaatccccttgctgcacataatagaatat |
4712987 |
T |
|
| Q |
111 |
cgagtctttgattccacctaagaggttcattatccgaaccatagagatgttcactgagagggccacgttgcatgaagtcataaactagaatcatctctgc |
210 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||| ||| ||| ||||||||||| |||||||||||||| |
|
|
| T |
4712986 |
taagtctttgattccacctaagaggttcgttatccgaaccatagagatgttcacggagagtgccatgttccataaagtcataaacaagaatcatctctgc |
4712887 |
T |
|
| Q |
211 |
atcttcgttgcaatatccaatgagggaaaccaagtgaatatgacgaagctgagagagcatctcgatttcattcatgaattcatttagaccttgtcgagaa |
310 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4712886 |
atcttcattgcaatatccaatgagggaaactaagtgaatatgacgaagctgagagagcaactcgatttcattcatgaattcatttagaccttgtcgagaa |
4712787 |
T |
|
| Q |
311 |
cccggtttacgacgttttatcgcaacaggtgtgagtccatcgatgtaacctttgtacacgttgccgaaccctcc |
384 |
Q |
| |
|
||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
4712786 |
cccaatttacgacgttttatcgcaacaggtatgagtccatcaatgtaacctttgtacacgttgccgaatcctcc |
4712713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 11 - 384
Target Start/End: Original strand, 4862985 - 4863358
Alignment:
| Q |
11 |
tccaagaatatgtttgtactcttaacgtcacgatgtatgatattgtgcttcgcaccttcatgaagataattcaacccccttgctgcacctaatagaatct |
110 |
Q |
| |
|
||||| |||||||| |||||||| |||||||| ||||||||||||||||| |||| |||||||||||| |||||||||||||| || || ||||||| |
|
|
| T |
4862985 |
tccaacaatatgttggtactcttcacgtcacggtgtatgatattgtgctttacaccagcatgaagataatgtaacccccttgctgcccccaacagaatct |
4863084 |
T |
|
| Q |
111 |
cgagtctttgattccacctaagaggttcattatccgaaccatagagatgttcactgagagggccacgttgcatgaagtcataaactagaatcatctctgc |
210 |
Q |
| |
|
| ||||| | ||||| ||||||||||||||||||||||||| |||| ||||| ||||| |||||||||||||||||||||||| ||||||||||| | |
|
|
| T |
4863085 |
caagtctcttcttccaagtaagaggttcattatccgaaccataaagatattcacggagagtgccacgttgcatgaagtcataaacgagaatcatctcctc |
4863184 |
T |
|
| Q |
211 |
atcttcgttgcaatatccaatgagggaaaccaagtgaatatgacgaagctgagagagcatctcgatttcattcatgaattcatttagaccttgtcgagaa |
310 |
Q |
| |
|
| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||| ||||||||||| ||||||| ||||||| ||||| |
|
|
| T |
4863185 |
accttcgttgcaatatccaatgagagaaaccaagtgaatatgacgaagctgagagagtaattcgatctcattcatgaactcatttataccttgttgagaa |
4863284 |
T |
|
| Q |
311 |
cccggtttacgacgttttatcgcaacaggtgtgagtccatcgatgtaacctttgtacacgttgccgaaccctcc |
384 |
Q |
| |
|
|| |||||| |||||||||||||||||||| || |||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
4863285 |
cctggtttaagacgttttatcgcaacaggtatgtctccatcaatataacctttgtacacgttgccgaaccctcc |
4863358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 17 - 384
Target Start/End: Complemental strand, 4698204 - 4697837
Alignment:
| Q |
17 |
aatatgtttgtactcttaacgtcacgatgtatgatattgtgcttcgcaccttcatgaagataattcaacccccttgctgcacctaatagaatctcgagtc |
116 |
Q |
| |
|
|||||||| |||||||| || ||||| |||||||||||||||||||||||| |||||||||||| | || |||||||| || |||||||||||||||| |
|
|
| T |
4698204 |
aatatgttggtactcttcacatcacggtgtatgatattgtgcttcgcacctgcatgaagataatgtaggcctcttgctgcccccaatagaatctcgagtc |
4698105 |
T |
|
| Q |
117 |
tttgattccacctaagaggttcattatccgaaccatagagatgttcactgagagggccacgttgcatgaagtcataaactagaatcatctctgcatcttc |
216 |
Q |
| |
|
| | ||||| |||||||||| ||||||||||||||||||| ||||| |||| |||||||| ||||||||| ||||| ||||||||||||||| |||| |
|
|
| T |
4698104 |
tcttcttccaagtaagaggttcgttatccgaaccatagagatattcacgaagagtgccacgttccatgaagtcgtaaacgagaatcatctctgcaccttc |
4698005 |
T |
|
| Q |
217 |
gttgcaatatccaatgagggaaaccaagtgaatatgacgaagctgagagagcatctcgatttcattcatgaattcatttagaccttgtcgagaacccggt |
316 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||||||| |||||||||| |||||||||||||||||| || |||| ||||||| ||||||||||| |
|
|
| T |
4698004 |
gttgcaatatccaatgagagaaaccaagtgaatgtgacgaagttgagagagcaactcgatttcattcatgaactcgtttacaccttgttgagaacccggt |
4697905 |
T |
|
| Q |
317 |
ttacgacgttttatcgcaacaggtgtgagtccatcgatgtaacctttgtacacgttgccgaaccctcc |
384 |
Q |
| |
|
|| ||||||||| || |||||||| | ||||||||||||||||| ||||||| || |||||||| |
|
|
| T |
4697904 |
ttcaaacgttttattgctacaggtgtaccttcatcgatgtaacctttgaacacgttaccaaaccctcc |
4697837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 11 - 384
Target Start/End: Complemental strand, 4784855 - 4784482
Alignment:
| Q |
11 |
tccaagaatatgtttgtactcttaacgtcacgatgtatgatattgtgcttcgcaccttcatgaagataattcaacccccttgctgcacctaatagaatct |
110 |
Q |
| |
|
||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||| |||| ||||||| |||||||| || |||||||||||||||| |
|
|
| T |
4784855 |
tccaacaatatgtttgtactcttcacgtcacggtgtatgatattgtgcttcgcacctgcatgcagataatgcaacccccgcgcggcacctaatagaatct |
4784756 |
T |
|
| Q |
111 |
cgagtctttgattccacctaagaggttcattatccgaaccatagagatgttcactgagagggccacgttgcatgaagtcataaactagaatcatctctgc |
210 |
Q |
| |
|
| || || || ||||| ||||||||| ||||| || ||||| |||| ||||| ||| |||||||||||||||||||||||| |||||||||||| | |
|
|
| T |
4784755 |
caagcctctgcttccaggtaagaggtttgttatctgatccataaagatattcacatagactgccacgttgcatgaagtcataaacgagaatcatctctac |
4784656 |
T |
|
| Q |
211 |
atcttcgttgcaatatccaatgagggaaaccaagtgaatatgacgaagctgagagagcatctcgatttcattcatgaattcatttagaccttgtcgagaa |
310 |
Q |
| |
|
| |||| |||||||||||||| || |||||||||||||||||||||||||||||||||| ||| || ||||||| ||| || || | ||||||| ||||| |
|
|
| T |
4784655 |
accttcattgcaatatccaataagtgaaaccaagtgaatatgacgaagctgagagagcaactcaatctcattcaagaactcgttcacaccttgttgagaa |
4784556 |
T |
|
| Q |
311 |
cccggtttacgacgttttatcgcaacaggtgtgagtccatcgatgtaacctttgtacacgttgccgaaccctcc |
384 |
Q |
| |
|
|| |||||| |||||||||||||||| ||||| | |||||| || |||||||||||||| |||||||||||||| |
|
|
| T |
4784555 |
cctggtttaagacgttttatcgcaactggtgtaactccatcaatataacctttgtacacattgccgaaccctcc |
4784482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 11 - 384
Target Start/End: Complemental strand, 4817284 - 4816911
Alignment:
| Q |
11 |
tccaagaatatgtttgtactcttaacgtcacgatgtatgatattgtgcttcgcaccttcatgaagataattcaacccccttgctgcacctaatagaatct |
110 |
Q |
| |
|
||||| ||||||||||||||||| || ||||| |||||||||||||||||||||||| |||| | ||||| |||||||| || |||||||||||||||| |
|
|
| T |
4817284 |
tccaacaatatgtttgtactcttcacatcacggtgtatgatattgtgcttcgcacctgcatgcaaataatgcaacccccgcgcggcacctaatagaatct |
4817185 |
T |
|
| Q |
111 |
cgagtctttgattccacctaagaggttcattatccgaaccatagagatgttcactgagagggccacgttgcatgaagtcataaactagaatcatctctgc |
210 |
Q |
| |
|
| || || || ||||| ||||||||| ||||| || ||||| |||| ||||| ||| |||||||||||||||||||||||| |||||||||||| | |
|
|
| T |
4817184 |
caagcctctgcttccaggtaagaggtttgttatctgatccataaagatattcacatagactgccacgttgcatgaagtcataaacgagaatcatctctac |
4817085 |
T |
|
| Q |
211 |
atcttcgttgcaatatccaatgagggaaaccaagtgaatatgacgaagctgagagagcatctcgatttcattcatgaattcatttagaccttgtcgagaa |
310 |
Q |
| |
|
| |||| |||||||||||||| || |||||||||||||||||||||||||||||||||| ||| || ||||||| ||| || || | ||||||| ||||| |
|
|
| T |
4817084 |
accttcattgcaatatccaataagtgaaaccaagtgaatatgacgaagctgagagagcaactcaatctcattcaagaactcgttaacaccttgttgagaa |
4816985 |
T |
|
| Q |
311 |
cccggtttacgacgttttatcgcaacaggtgtgagtccatcgatgtaacctttgtacacgttgccgaaccctcc |
384 |
Q |
| |
|
|| |||||| |||||||||||||||| ||||| | |||||| || |||||||||||||| |||||||||||||| |
|
|
| T |
4816984 |
ccaggtttaagacgttttatcgcaactggtgtaactccatcaatataacctttgtacacattgccgaaccctcc |
4816911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 11 - 384
Target Start/End: Original strand, 4642800 - 4643173
Alignment:
| Q |
11 |
tccaagaatatgtttgtactcttaacgtcacgatgtatgatattgtgcttcgcaccttcatgaagataattcaacccccttgctgcacctaatagaatct |
110 |
Q |
| |
|
||||| |||||||| || ||||| |||||||||||||| || ||||||||| | | ||||||||||||||| ||| ||||| |||||||||||||| | |
|
|
| T |
4642800 |
tccaacaatatgttggtgctcttcacgtcacgatgtattattttgtgcttcacctcagcatgaagataattcagccctcttgcggcacctaatagaattt |
4642899 |
T |
|
| Q |
111 |
cgagtctttgattccacctaagaggttcattatccgaaccatagagatgttcactgagagggccacgttgcatgaagtcataaactagaatcatctctgc |
210 |
Q |
| |
|
| || || || |||| || || || |||| |||||||| |||| |||| |||| || | |||||||| |||||||| | ||||||||||| |
|
|
| T |
4642900 |
caagcctctgcctccaaggtagtggctcgttattagaaccataaagatactcacaaagagtaccgtgctgcatgaactcataaaccaaaatcatctctgt |
4642999 |
T |
|
| Q |
211 |
atcttcgttgcaatatccaatgagggaaaccaagtgaatatgacgaagctgagagagcatctcgatttcattcatgaattcatttagaccttgtcgagaa |
310 |
Q |
| |
|
|| |||||||||||||| | |||||| ||||||||||| || |||||||| ||||||| |||||||||||||||||| || || ||||||| |||| |
|
|
| T |
4643000 |
gtcatcgttgcaatatcccacgagggacaccaagtgaatgtggcgaagctgggagagcaactcgatttcattcatgaactcgttggcaccttgttgagag |
4643099 |
T |
|
| Q |
311 |
cccggtttacgacgttttatcgcaacaggtgtgagtccatcgatgtaacctttgtacacgttgccgaaccctcc |
384 |
Q |
| |
|
|||| ||| | || || | ||||||| ||||| |||||| | ||||||||||||||||||| |||||||| |
|
|
| T |
4643100 |
cccgatttgaggcgcttaaccgcaacaagtgtggatccatcaacacaacctttgtacacgttgccaaaccctcc |
4643173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 19 - 384
Target Start/End: Original strand, 4630013 - 4630378
Alignment:
| Q |
19 |
tatgtttgtactcttaacgtcacgatgtatgatattgtgcttcgcaccttcatgaagataattcaacccccttgctgcacctaatagaatctcgagtctt |
118 |
Q |
| |
|
|||||| || ||||| |||||||||||||| || ||||||||| | | |||||||||||||| ||| || |||||||| ||||| ||||| || || |
|
|
| T |
4630013 |
tatgttggtgctctttacgtcacgatgtattatcttgtgcttcacctcagaatgaagataattcagccctctcgctgcacccaataggatctcaagcctc |
4630112 |
T |
|
| Q |
119 |
tgattccacctaagaggttcattatccgaaccatagagatgttcactgagagggccacgttgcatgaagtcataaactagaatcatctctgcatcttcgt |
218 |
Q |
| |
|
|| ||||| || || | ||||| |||||||| |||| || | ||||| || | |||||||| |||||||| ||||||||||||| | || | |
|
|
| T |
4630113 |
tgcttccatggtaggggctgattattggaaccatacagatactcgcagagagtaccgtgctgcatgaactcataaaccagaatcatctctgtgttgtcat |
4630212 |
T |
|
| Q |
219 |
tgcaatatccaatgagggaaaccaagtgaatatgacgaagctgagagagcatctcgatttcattcatgaattcatttagaccttgtcgagaacccggttt |
318 |
Q |
| |
|
|||||||||| | ||||| ||||||||||| || |||||||| ||||||| ||||||||| |||||||| || || ||||||| |||| || | ||| |
|
|
| T |
4630213 |
tgcaatatcctacaagggacaccaagtgaatgtggcgaagctgggagagcaactcgatttcgttcatgaactcgttggcaccttgttgagagcctgattt |
4630312 |
T |
|
| Q |
319 |
acgacgttttatcgcaacaggtgtgagtccatcgatgtaacctttgtacacgttgccgaaccctcc |
384 |
Q |
| |
|
| ||||||||||||||||||||| |||||||| |||||||||||||||| || |||||||| |
|
|
| T |
4630313 |
gaggcgttttatcgcaacaggtgtggatccatcgacacaacctttgtacacgttcccaaaccctcc |
4630378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 179 - 384
Target Start/End: Original strand, 4666199 - 4666404
Alignment:
| Q |
179 |
tgcatgaagtcataaactagaatcatctctgcatcttcgttgcaatatccaatgagggaaaccaagtgaatatgacgaagctgagagagcatctcgattt |
278 |
Q |
| |
|
|||||||| |||||||| ||||||||||||| || || ||||||||||| | ||||| ||||||||||| || |||||||||||||||| ||||||| |
|
|
| T |
4666199 |
tgcatgaactcataaaccagaatcatctctgtgtcgtcattgcaatatcccacaagggataccaagtgaatgtggcgaagctgagagagcaattcgattt |
4666298 |
T |
|
| Q |
279 |
cattcatgaattcatttagaccttgtcgagaacccggtttacgacgttttatcgcaacaggtgtgagtccatcgatgtaacctttgtacacgttgccgaa |
378 |
Q |
| |
|
| |||||||| || || ||||||| |||| || | ||| | |||||||| |||||| ||||| |||||||| ||||||||||||||||||| || |
|
|
| T |
4666299 |
cgttcatgaactcgttggcaccttgttgagagcctgatttgaggcgttttatggcaacaagtgtggatccatcgacacaacctttgtacacgttgccaaa |
4666398 |
T |
|
| Q |
379 |
ccctcc |
384 |
Q |
| |
|
|||||| |
|
|
| T |
4666399 |
ccctcc |
4666404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 177 - 384
Target Start/End: Original strand, 4652782 - 4652989
Alignment:
| Q |
177 |
gttgcatgaagtcataaactagaatcatctctgcatcttcgttgcaatatccaatgagggaaaccaagtgaatatgacgaagctgagagagcatctcgat |
276 |
Q |
| |
|
|||||||||| |||||||| | |||||| |||| || || ||||||||||| | |||||| ||||||||||| || |||||||| ||||| | |||||| |
|
|
| T |
4652782 |
gttgcatgaactcataaaccaaaatcatttctgtgtcatcattgcaatatcccacgagggataccaagtgaatgtggcgaagctgggagagtaactcgat |
4652881 |
T |
|
| Q |
277 |
ttcattcatgaattcatttagaccttgtcgagaacccggtttacgacgttttatcgcaacaggtgtgagtccatcgatgtaacctttgtacacgttgccg |
376 |
Q |
| |
|
||||||||||| || || ||||||| |||| || | ||| | ||||||||||||||||| || |||||||||| ||||||||||||||||||| |
|
|
| T |
4652882 |
ctcattcatgaactcgttggcaccttgttgagagccagatttgaggcgttttatcgcaacaggcatggatccatcgatgcaacctttgtacacgttgcca |
4652981 |
T |
|
| Q |
377 |
aaccctcc |
384 |
Q |
| |
|
|| ||||| |
|
|
| T |
4652982 |
aatcctcc |
4652989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 11 - 384
Target Start/End: Original strand, 4660900 - 4661273
Alignment:
| Q |
11 |
tccaagaatatgtttgtactcttaacgtcacgatgtatgatattgtgcttcgcaccttcatgaagataattcaacccccttgctgcacctaatagaatct |
110 |
Q |
| |
|
||||| |||||||| || ||||| ||||| || ||||| || ||||| ||| | | |||||||||||| |||||| ||||||| ||| ||||| |||| |
|
|
| T |
4660900 |
tccaacaatatgttggtgctctttacgtcgcggtgtattattttgtgtttcacctcagcatgaagataatgcaaccctcttgctgaacccaataggatct |
4660999 |
T |
|
| Q |
111 |
cgagtctttgattccacctaagaggttcattatccgaaccatagagatgttcactgagagggccacgttgcatgaagtcataaactagaatcatctctgc |
210 |
Q |
| |
|
| || ||||| |||| || || | |||| |||||||| ||||| || | ||||| || || |||||||| |||||||| |||||||||| || |
|
|
| T |
4661000 |
caagcctttgcctccaaggtaggggctggttattagaaccataaagatgctcgcagagagtaccgcgctgcatgaattcataaaccagaatcatctatgt |
4661099 |
T |
|
| Q |
211 |
atcttcgttgcaatatccaatgagggaaaccaagtgaatatgacgaagctgagagagcatctcgatttcattcatgaattcatttagaccttgtcgagaa |
310 |
Q |
| |
|
| || || |||||||| |||||||| ||||| ||||| || |||||||| ||||||| ||||||||| |||||||| || || | ||||||| |||| |
|
|
| T |
4661100 |
gttgtcattacaatatcccatgagggacaccaaatgaatgtggcgaagctgggagagcaactcgatttcgttcatgaactcgttgacaccttgttgagag |
4661199 |
T |
|
| Q |
311 |
cccggtttacgacgttttatcgcaacaggtgtgagtccatcgatgtaacctttgtacacgttgccgaaccctcc |
384 |
Q |
| |
|
|||| ||| | ||||| ||||||||| |||| |||||| | ||||||||||||||||||| |||||||| |
|
|
| T |
4661200 |
cccgatttgaggcgtttaatcgcaacaagtgttgatccatcaacacaacctttgtacacgttgccaaaccctcc |
4661273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 179 - 369
Target Start/End: Original strand, 4636121 - 4636311
Alignment:
| Q |
179 |
tgcatgaagtcataaactagaatcatctctgcatcttcgttgcaatatccaatgagggaaaccaagtgaatatgacgaagctgagagagcatctcgattt |
278 |
Q |
| |
|
|||||||| ||||| || ||||||||||||| | |||||||||||||| | ||||| ||||||||||| || |||||||| ||||||| |||||| | |
|
|
| T |
4636121 |
tgcatgaactcatagaccagaatcatctctgtcttgtcgttgcaatatcccacaagggataccaagtgaatgtggcgaagctgggagagcaactcgatct |
4636220 |
T |
|
| Q |
279 |
cattcatgaattcatttagaccttgtcgagaacccggtttacgacgttttatcgcaacaggtgtgagtccatcgatgtaacctttgtacac |
369 |
Q |
| |
|
| |||||||| |||||| ||||||| |||| |||| | | |||||||||||||| |||||| |||||| ||| ||||||||||||| |
|
|
| T |
4636221 |
cgttcatgaactcatttgcaccttgttgagagcccgacctgaggcgttttatcgcaacgggtgtggatccatcaatgaaacctttgtacac |
4636311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 215 - 384
Target Start/End: Original strand, 4671940 - 4672109
Alignment:
| Q |
215 |
tcgttgcaatatccaatgagggaaaccaagtgaatatgacgaagctgagagagcatctcgatttcattcatgaattcatttagaccttgtcgagaacccg |
314 |
Q |
| |
|
|||| ||||||||||| |||||| ||||||||||| || ||||| |||||||| | ||||||||| |||||||| || || |||||| |||| |||| |
|
|
| T |
4671940 |
tcgtcgcaatatccaacgagggataccaagtgaatgtggcgaagttgagagagtaactcgatttcgttcatgaactcgttggcaccttgctgagagcccg |
4672039 |
T |
|
| Q |
315 |
gtttacgacgttttatcgcaacaggtgtgagtccatcgatgtaacctttgtacacgttgccgaaccctcc |
384 |
Q |
| |
|
||| | |||||||| |||||| ||||| |||||||| |||||||||||| ||| || |||||||| |
|
|
| T |
4672040 |
atttgagccgttttatggcaacaagtgtggatccatcgacacaacctttgtacaggtttccaaaccctcc |
4672109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 111
Target Start/End: Original strand, 4671736 - 4671836
Alignment:
| Q |
11 |
tccaagaatatgtttgtactcttaacgtcacgatgtatgatattgtgcttcgcaccttcatgaagataattcaacccccttgctgcacctaatagaatct |
110 |
Q |
| |
|
||||| |||||||| || ||||| |||||||||||||| || ||||||||| | | ||||||||||||| | ||| || || ||||| |||||||||| |
|
|
| T |
4671736 |
tccaacaatatgttggtgctcttcacgtcacgatgtattattttgtgcttcacctcagcatgaagataatttagccctctcgcagcacccaatagaatct |
4671835 |
T |
|
| Q |
111 |
c |
111 |
Q |
| |
|
| |
|
|
| T |
4671836 |
c |
4671836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 111
Target Start/End: Original strand, 4652616 - 4652716
Alignment:
| Q |
11 |
tccaagaatatgtttgtactcttaacgtcacgatgtatgatattgtgcttcgcaccttcatgaagataattcaacccccttgctgcacctaatagaatct |
110 |
Q |
| |
|
||||| |||||||| || ||||| |||||||| ||||| || ||||| ||| | || ||||||||||||||| ||| || || | ||| |||||||||| |
|
|
| T |
4652616 |
tccaacaatatgttggtgctcttcacgtcacggtgtattatcttgtgtttcacctctgcatgaagataattcagccctctcgcggaacccaatagaatct |
4652715 |
T |
|
| Q |
111 |
c |
111 |
Q |
| |
|
| |
|
|
| T |
4652716 |
c |
4652716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 11 - 384
Target Start/End: Complemental strand, 18926759 - 18926386
Alignment:
| Q |
11 |
tccaagaatatgtttgtactcttaacgtcacgatgtatgatattgtgcttcgcaccttcatgaagataattcaacccccttgctgcacctaatagaatct |
110 |
Q |
| |
|
||||| |||||||| || || || || ||||||||||| || ||||| ||| | | ||||||||||||||| ||| ||||| ||||| |||| ||||| |
|
|
| T |
18926759 |
tccaataatatgttggtgcttttcacatcacgatgtattatcttgtgtttcacctcagcatgaagataattcagccctcttgcggcacccaatacaatct |
18926660 |
T |
|
| Q |
111 |
cgagtctttgattccacctaagaggttcattatccgaaccatagagatgttcactgagagggccacgttgcatgaagtcataaactagaatcatctctgc |
210 |
Q |
| |
|
| || ||||| ||||| || |||| |||| |||||||| |||| |||| |||| |||||||||||||| ||||||| |||||||||||| |
|
|
| T |
18926659 |
caagcctttgcttccaaagtaggggttggttattggaaccatatagatactcacaaagagtaccacgttgcatgaactcataaatcagaatcatctcttt |
18926560 |
T |
|
| Q |
211 |
atcttcgttgcaatatccaatgagggaaaccaagtgaatatgacgaagctgagagagcatctcgatttcattcatgaattcatttagaccttgtcgagaa |
310 |
Q |
| |
|
| ||||||| || || | |||||| |||| ||||| || ||||| |||||||||| |||||| ||||||||||| || || |||||| |||| |
|
|
| T |
18926559 |
gttgccgttgcagtacccgacgagggataccagatgaatgtggcgaagttgagagagcaactcgatctcattcatgaactcgttggccccttgttgagag |
18926460 |
T |
|
| Q |
311 |
cccggtttacgacgttttatcgcaacaggtgtgagtccatcgatgtaacctttgtacacgttgccgaaccctcc |
384 |
Q |
| |
|
|| ||||| |||||||||| ||||| |||||| | ||||||| ||||||| ||||||||||| |||||||| |
|
|
| T |
18926459 |
cctggtttgagacgttttattgcaacgggtgtggatttatcgatgaaacctttatacacgttgccaaaccctcc |
18926386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 245 - 336
Target Start/End: Complemental strand, 5479396 - 5479305
Alignment:
| Q |
245 |
tgaatatgacgaagctgagagagcatctcgatttcattcatgaattcatttagaccttgtcgagaacccggtttacgacgttttatcgcaac |
336 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||| ||||| |||||| ||||||| | |||||||||||| | |||||||| ||||| |
|
|
| T |
5479396 |
tgaatatgacgaagcttcgagagcatgtcgatttcattgatgaactcattttcaccttgttgtgaacccggtttaagccgttttattgcaac |
5479305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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