View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17569_high_16 (Length: 381)
Name: NF17569_high_16
Description: NF17569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17569_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 19 - 371
Target Start/End: Original strand, 24435680 - 24436044
Alignment:
| Q |
19 |
ataccaaccacaaacatgccttcattgataccaatagtaatatacaaaaacaaattataagcaaggt------------tttttattcattcaacataaa |
106 |
Q |
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| T |
24435680 |
ataccaaccacaaacatgccttcattgataccaataataatatacaaaaacaaattacaagcaaggtgaaatttgtggttttttattcattcaacataaa |
24435779 |
T |
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| Q |
107 |
tttaatgtagatgatctgaagcaaacgatataatagcaataataaacctcatctcactgttgagtgtagaaagggaagaagtattaacaatcttttcatt |
206 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24435780 |
tttattgtagatgatctgaagcaaacgatataatagcaataataaacctcatctcactgttgagtgtagaaagggaagaagtattaacaatcttttcatt |
24435879 |
T |
|
| Q |
207 |
aactaagctatgttcgcactcttcaagtgcatcactagcatatgcaacatccaagcttatagtttccgaatagtcatccaacgcaatttgtaactcatca |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
24435880 |
aactaagctatgttcgcactcttcaagtgcatcactagcatatgcaacatccaagcttatagtttccgaatactcatccaacgcaatttgtaactcatca |
24435979 |
T |
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| Q |
307 |
accactttatcataatttagggcgcatcctttgatggtttgagaagaaggatacttttgcttcat |
371 |
Q |
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| T |
24435980 |
accactttatcataatttagggcacatcctttgatggtttgagaagaaggatactttttcttcat |
24436044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 25802770 - 25802826
Alignment:
| Q |
169 |
agtgtagaaagggaagaagtattaacaatcttttcattaactaagctatgttcgcac |
225 |
Q |
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| T |
25802770 |
agtgtagcaatggaagaaatattaacaatcttttcattagctaagctacgttcgcac |
25802826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 85 - 267
Target Start/End: Complemental strand, 13436328 - 13436152
Alignment:
| Q |
85 |
ttttttattcattcaacataaatttaatgtagatgatctgaagcaaacgatataatagcaataataaacctcatctcactgttgagtgtagaaagggaag |
184 |
Q |
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||||||||||||||||||||| |||| ||| ||||| || |||| |||||||||||||| ||||| ||||||||| || | |||||||| ||||| |
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| T |
13436328 |
ttttttattcattcaacataagtttacagtacatgatttgcagcactcgatataatagcaagaataagttccatctcactattcattgtagaaatggaag |
13436229 |
T |
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| Q |
185 |
aagtattaacaatcttttcattaactaagctatgttcgcactcttcaagtgcatcactagcatatgcaacatccaagcttata |
267 |
Q |
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|| |||||| |||||||||||||||||||||| |||| ||||||||||||| ||||||| ||||||||||||||||| |
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| T |
13436228 |
aaatattaaaaatcttttcattaactaagcta------cacttttcaagtgcatcaaaagcatatacaacatccaagcttata |
13436152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 266
Target Start/End: Original strand, 35079404 - 35079490
Alignment:
| Q |
180 |
ggaagaagtattaacaatcttttcattaactaagctatgttcgcactcttcaagtgcatcactagcatatgcaacatccaagcttat |
266 |
Q |
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|||||||||||||||||||||||| ||| | |||||| |||| ||| ||||||||||| ||||||||| ||| |||||||||| |
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| T |
35079404 |
ggaagaagtattaacaatcttttcgttagccaagctacgttcacacatgtcaagtgcatcgctagcatatttgacagccaagcttat |
35079490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 248
Target Start/End: Original strand, 35074435 - 35074503
Alignment:
| Q |
180 |
ggaagaagtattaacaatcttttcattaactaagctatgttcgcactcttcaagtgcatcactagcata |
248 |
Q |
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|||||||||||| ||||||||||||| | | |||||| |||| ||| ||||||||||| |||||||| |
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| T |
35074435 |
ggaagaagtattgacaatcttttcatcagccaagctacgttcacacatgtcaagtgcatcgctagcata |
35074503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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