View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17569_high_18 (Length: 374)
Name: NF17569_high_18
Description: NF17569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17569_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 2793978 - 2793621
Alignment:
| Q |
1 |
cgtttttcagaatggaaagaatcttatcagcagcacctctgataatcccaagcggctgaccaccaaaccgctgctggattacactcaacatcgcctcata |
100 |
Q |
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| T |
2793978 |
cgtttttcagaatggaaagaatctcatcagcagcacctctgataatcccaagcggctgaccaccaaaccgctgctggattacactcaacatcgcctcata |
2793879 |
T |
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| Q |
101 |
agcagcacgagtttccttcgtctttggctcgtaaacaccgtcatcaatggcattgagtacactctggctttcgctctgaagacgacgctgtttgttccga |
200 |
Q |
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| T |
2793878 |
agcagcacgagtttccttcgtctttggctcgtaaacaccgttatcaacggcattgagtacactctggctttcgctctgaagacgacgctgtttgttccta |
2793779 |
T |
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| Q |
201 |
cgataacctccggagtcagattcatcgattaggtttctcttaggaggacggttacgaaaagcacgatcgccaaaaaccttgagatcgattctaccggaaa |
300 |
Q |
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| T |
2793778 |
cgataacctccggagtcaaattcatcgattaggtttctcttaggaggacggttacgaaaagcacgatcgccaaaaaccttgagatcgattctaccggaaa |
2793679 |
T |
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| Q |
301 |
gtgattctggttcgccggcggtccgttcagcggtgggatgtgaatcggaggtgaggac |
358 |
Q |
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| T |
2793678 |
gtgattctggttcgccggtggtccgttcagcggtgggatgtgaatcggaggtgaggac |
2793621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 53 - 146
Target Start/End: Complemental strand, 29261349 - 29261256
Alignment:
| Q |
53 |
cggctgaccaccaaaccgctgctggattacactcaacatcgcctcataagcagcacgagtttccttcgtctttggctcgtaaacaccgtcatca |
146 |
Q |
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| T |
29261349 |
cggctgaccaccaagctgttgctgaatcacactcaacatagcttcataagctgctcttgtctccttcgtcttcggctgataaacaccgtcatca |
29261256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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