View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17569_high_32 (Length: 282)
Name: NF17569_high_32
Description: NF17569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17569_high_32 |
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Alignment Details
Target: chr3 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 59 - 275
Target Start/End: Complemental strand, 8521454 - 8521238
Alignment:
| Q |
59 |
gatatgatgtggaagaatttgtgagatgaaatatcaaaccactcagctaagaaaaataacaaaccaatcaatgctcctataatatgataacaatgacttt |
158 |
Q |
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| T |
8521454 |
gatatgatgtggaagaatttgtgagatgaaatatcaaaccactcagctagaaaaaataacaaaccaatcgatgctcctataatacgataacaatgacttt |
8521355 |
T |
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| Q |
159 |
gaagtcaatctacatgtacaaccacagctttttagccaatgtaatgttgaaagattcaaaaaagtcagtatacataatggatgaacaaaaaattaatgat |
258 |
Q |
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| T |
8521354 |
aaagtcaatctacatgtacaaccacagctttttagccaatgtaacgttgaaagattcaaaaaagtcggtattcgtaatggatgaaccaaaaatgaatgat |
8521255 |
T |
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| Q |
259 |
gcttgttagaataatct |
275 |
Q |
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|||||||||||| |||| |
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| T |
8521254 |
gcttgttagaatgatct |
8521238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 59 - 270
Target Start/End: Complemental strand, 8511865 - 8511655
Alignment:
| Q |
59 |
gatatgatgtggaagaatttgtgagatgaaatatcaaaccactcagctaagaaaaataacaaaccaatcaatgctcctataatatgataacaatgacttt |
158 |
Q |
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| T |
8511865 |
gatatgatgtgaaa-aatttgtgagatgaaaaataaaaccaatcaggtagtaaaaataggaaatcaatcaatgctcctataatacgataacaatgacttt |
8511767 |
T |
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| Q |
159 |
gaagtcaatctacatgtacaaccacagctttttagccaatgtaatgttgaaagattcaaaaaagtcagtat-acataatggatgaacaaaaaattaatga |
257 |
Q |
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| T |
8511766 |
caagtcaatgtacatgtacgaccacaactttttagccaatgtaatgttgaaagatt-aaagaaatcattataatgtaatggatgagcaaaaaatgaatga |
8511668 |
T |
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| Q |
258 |
tgcttgttagaat |
270 |
Q |
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| T |
8511667 |
agcatattagaat |
8511655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 83 - 212
Target Start/End: Complemental strand, 12251163 - 12251036
Alignment:
| Q |
83 |
gatgaaatatcaaaccactcagctaagaaaaataacaaaccaatcaatgctcctataatatgataacaatgactttgaagtcaatctacatgtacaacca |
182 |
Q |
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||||||| ||||||| | | ||||| |||||| | ||||||||||||||||| ||||||| ||||||||||| ||| |||||| | |||||||||||||| |
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| T |
12251163 |
gatgaaaaatcaaactaattagctaggaaaaa-atcaaaccaatcaatgctc-tataatacgataacaatgattttaaagtcattgtacatgtacaacca |
12251066 |
T |
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| Q |
183 |
cagctttttagccaatgtaatgttgaaaga |
212 |
Q |
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| T |
12251065 |
caactttttagccaatgtcatgttcaaaga |
12251036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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