View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17569_high_33 (Length: 282)
Name: NF17569_high_33
Description: NF17569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17569_high_33 |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 45652222 - 45652507
Alignment:
| Q |
1 |
ataggttttgttctaatcctaagttgttagactgatcttactagatacacttcatagtcccaatcttatagaattttggaatactaatgactgccattta |
100 |
Q |
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| T |
45652222 |
ataggttttgttctaatcctaagttgttagactgatcttactagatacacttcatagtcccaatcttatagaattttggagtactaatgactgccattta |
45652321 |
T |
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| Q |
101 |
cac--ataaaaggcaaagcaaacttaaaagg----------------ttcaagagaaagaagctttcaacattgttaaagacatatgatacaagtattga |
182 |
Q |
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| T |
45652322 |
cacaaataaaaggcaaagcaaacttaaaaggtttgagcatatttgaattcaagagaaagaagctttcaacattgttaaagacatatgatacaagtattga |
45652421 |
T |
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| Q |
183 |
agaccacaattttacactacta----ccacaacaatatttaacgccataattttaccatcagatgcataatcatgcatgcatttca |
264 |
Q |
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| T |
45652422 |
agaccacaattttacactactaccggccacaacaatatttaacaccataattttaccatcagaggcataatcatgcatgcatttca |
45652507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 170 - 248
Target Start/End: Original strand, 31523806 - 31523884
Alignment:
| Q |
170 |
atacaagtattgaagaccacaattttacactactaccacaacaatatttaacgccataattttaccatcagatgcataa |
248 |
Q |
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||||||||||||||||||| |||||||||| ||| ||| |||||||||||| ||||||||||| || |||| |||||| |
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| T |
31523806 |
atacaagtattgaagaccaaaattttacaccactgacactacaatatttaacaccataattttatcaacagaggcataa |
31523884 |
T |
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