View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17569_high_4 (Length: 578)
Name: NF17569_high_4
Description: NF17569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17569_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 6 - 494
Target Start/End: Original strand, 3960760 - 3961255
Alignment:
| Q |
6 |
actcgtagaacaaacaagtcaagatgttcaacctctccaaactccaccgctaagataaaactttcaccgcctccgcaatatcttccactgcactaacctc |
105 |
Q |
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| T |
3960760 |
actcgtagcacaaacaagtcaggatgttcaacctctccaaactccaccgctaagataaaactttcaccgcctccacaatatcttccaccgcactaacctc |
3960859 |
T |
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| Q |
106 |
gttcttaaaaatgatttgattcctcgtttgccaaatggccgaaatcgttgcatgccaaataagatgcaaacccttccggatcctcttgtttctaccttct |
205 |
Q |
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| T |
3960860 |
gttcttaaaaatgatttgatttctcgcttgccaaatggcccaaatcattgcatgccaaataagacgcaaatccttctggatcctcttgtttctacctttt |
3960959 |
T |
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| Q |
206 |
aaacttcaacactcccaatgca------agttaggtggatttatgaaacagatttcga-ccacataatcaccttataccaaatatcaatcaccttttcac |
298 |
Q |
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| T |
3960960 |
aaactccaacactcccaatgcacaaacaagttaggaggatatatgaaacagatttctaaccacataatcaccttataccaaatatcaatcaccttttcac |
3961059 |
T |
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| Q |
299 |
aatggataaaaagatggttagccgattcgtccctcctaccacaaaacacacataacgaccaagcatccggaggaagaataatccgcctttgaagattgac |
398 |
Q |
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| T |
3961060 |
aatggataaaatgatggttagccgattcgtccctcctaccacaaaacacgcacaacaacgaagcatccggaggaagaatatcccgcctttgaagattgac |
3961159 |
T |
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| Q |
399 |
tctagttggaatccgatctaggagaagtttccaagaaaaatccacaaccttctagggggccgagcttttctaaatacaatcaaacactctcctctc |
494 |
Q |
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| T |
3961160 |
tcgcgttggaatccaatctaggagaagtttccaagaaaaagccacgacctttgagggagctgagcttttccaaatacaatcaaacactctcctctc |
3961255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 227
Target Start/End: Original strand, 9359434 - 9359539
Alignment:
| Q |
122 |
tgattcctcgtttgccaaatggccgaaatcgttgcatgccaaataagatgcaaacccttccggatcctcttgtttctaccttctaaacttcaacactccc |
221 |
Q |
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| T |
9359434 |
tgattcctagcttgccaaatagcccaaatagttgcatgccaaataatccacaaccccttgcgaatcttcttgtttctcccttcaatactccaacatgccc |
9359533 |
T |
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| Q |
222 |
aatgca |
227 |
Q |
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| T |
9359534 |
aatgca |
9359539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 295 - 343
Target Start/End: Original strand, 43976464 - 43976512
Alignment:
| Q |
295 |
tcacaatggataaaaagatggttagccgattcgtccctcctaccacaaa |
343 |
Q |
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| T |
43976464 |
tcacaatgaataaaaagatggattgccgactcgtccatcctaccacaaa |
43976512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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