View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17569_high_41 (Length: 258)

Name: NF17569_high_41
Description: NF17569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17569_high_41
NF17569_high_41
[»] chr8 (9 HSPs)
chr8 (11-258)||(950102-950349)
chr8 (15-111)||(14939634-14939730)
chr8 (15-118)||(1101548-1101651)
chr8 (20-111)||(31032024-31032115)
chr8 (15-101)||(19473661-19473747)
chr8 (15-101)||(19544586-19544672)
chr8 (15-101)||(19588024-19588110)
chr8 (59-117)||(29456064-29456122)
chr8 (15-111)||(3379130-3379226)
[»] scaffold0057 (1 HSPs)
scaffold0057 (15-111)||(58905-59001)
[»] chr1 (2 HSPs)
chr1 (15-111)||(5924801-5924897)
chr1 (20-111)||(9487460-9487549)
[»] chr4 (1 HSPs)
chr4 (15-111)||(52545118-52545214)
[»] chr5 (1 HSPs)
chr5 (20-99)||(20012943-20013022)
[»] chr6 (1 HSPs)
chr6 (15-93)||(24544757-24544835)
[»] chr2 (1 HSPs)
chr2 (14-100)||(17148642-17148728)


Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 11 - 258
Target Start/End: Original strand, 950102 - 950349
Alignment:
Q  11 cagagatagagatcatagtgatcagaaagaaaacaatcatatgcgtattcatgtagaagatactcatagaaattcatagtagaatgaataggttgttaaa 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  950102 cagagatagagatcatagtgatcagaaagaaaacaatcatatgcgtattcatgtagaagatactcatagaaattcatagtagaatgaataggttgttaga 950201  T
Q  111 ataataattgtaatagtacaatgtgtattcctatatatagagattagttgaagtagtcaactccaagtcactttgaccaaattaataactcgagataacc 210  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  950202 ataataattgaaatagtacaatgtgtattcctatatatagaggttagttgaagtagtcaactccaagtaactttgaccaaactaataactcgagataacc 950301  T
Q  211 tatcaactaactatagtgtattattatgattaccgtgattttgacaat 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  950302 tatcaactaactatagtgtattattatgattaccgtgattttgacaat 950349  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 111
Target Start/End: Complemental strand, 14939730 - 14939634
Alignment:
Q  15 gatagagatcatagtgatcagaaagaaaacaatcatatgcgtattcatgtagaagatactcatagaaattcatagtagaatgaataggttgttaaaa 111  Q
    |||| |||||||||||||||| |||||| ||| |||||| ||| ||||||||||||||||| |||||| ||||  |||||||||||| ||| |||||    
T  14939730 gataaagatcatagtgatcagcaagaaagcaagcatatgagtactcatgtagaagatactcgtagaaactcattatagaatgaatagattgataaaa 14939634  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 118
Target Start/End: Complemental strand, 1101651 - 1101548
Alignment:
Q  15 gatagagatcatagtgatcagaaagaaaacaatcatatgcgtattcatgtagaagatactcatagaaattcatagtagaatgaataggttgttaaaataa 114  Q
    ||||||||||||| ||||||  || ||| |||||||| | ||||| |||| |  || ||||||| |||||||||||||||||| ||| ||||||||| ||    
T  1101651 gatagagatcatactgatcaacaacaaagcaatcataggagtatttatgtgggtgacactcataaaaattcatagtagaatgagtagattgttaaaagaa 1101552  T
Q  115 taat 118  Q
    ||||    
T  1101551 taat 1101548  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 20 - 111
Target Start/End: Original strand, 31032024 - 31032115
Alignment:
Q  20 agatcatagtgatcagaaagaaaacaatcatatgcgtattcatgtagaagatactcatagaaattcatagtagaatgaataggttgttaaaa 111  Q
    |||||||||||||||| |||||| ||| |||| | ||| |||||| | ||||||||||||||| ||||  |||||||||||| ||| |||||    
T  31032024 agatcatagtgatcagcaagaaagcaagcataagagtactcatgtgggagatactcatagaaactcattatagaatgaatagattgataaaa 31032115  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 101
Target Start/End: Complemental strand, 19473747 - 19473661
Alignment:
Q  15 gatagagatcatagtgatcagaaagaaaacaatcatatgcgtattcatgtagaagatactcatagaaattcatagtagaatgaatag 101  Q
    |||| |||||||||||||||| |||||| |||  ||| | ||| |||||| | ||||||||||||||| ||||  ||||||||||||    
T  19473747 gataaagatcatagtgatcagcaagaaagcaagaataagagtactcatgtgggagatactcatagaaactcattatagaatgaatag 19473661  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 101
Target Start/End: Complemental strand, 19544672 - 19544586
Alignment:
Q  15 gatagagatcatagtgatcagaaagaaaacaatcatatgcgtattcatgtagaagatactcatagaaattcatagtagaatgaatag 101  Q
    |||| |||||||||||||||| |||||| |||  ||| | ||| |||||| | ||||||||||||||| ||||  ||||||||||||    
T  19544672 gataaagatcatagtgatcagcaagaaagcaagaataagagtactcatgtgggagatactcatagaaactcattatagaatgaatag 19544586  T

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Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 101
Target Start/End: Original strand, 19588024 - 19588110
Alignment:
Q  15 gatagagatcatagtgatcagaaagaaaacaatcatatgcgtattcatgtagaagatactcatagaaattcatagtagaatgaatag 101  Q
    |||| |||||||||||||||| |||||| |||  ||| | ||| |||||| | ||||||||||||||| ||||  ||||||||||||    
T  19588024 gataaagatcatagtgatcagcaagaaagcaagaataagagtactcatgtgggagatactcatagaaactcattatagaatgaatag 19588110  T

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Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 59 - 117
Target Start/End: Original strand, 29456064 - 29456122
Alignment:
Q  59 tcatgtagaagatactcatagaaattcatagtagaatgaataggttgttaaaataataa 117  Q
    |||||| |||||||||||||||||| |||| |||||||||||| ||| ||||| |||||    
T  29456064 tcatgtggaagatactcatagaaatacataatagaatgaatagattgataaaagaataa 29456122  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 111
Target Start/End: Original strand, 3379130 - 3379226
Alignment:
Q  15 gatagagatcatagtgatcagaaagaaaacaatcatatgcgtattcatgtagaagatactcatagaaattcatagtagaatgaataggttgttaaaa 111  Q
    |||| |||||||| ||||||| |||||| |||  |||   ||| |||||| | ||||||||||||||| ||||  |||||||||||| ||| |||||    
T  3379130 gataaagatcataatgatcagcaagaaagcaagtataaaagtactcatgtgggagatactcatagaaactcattatagaatgaatagattgataaaa 3379226  T

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Target: scaffold0057 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 111
Target Start/End: Complemental strand, 59001 - 58905
Alignment:
Q  15 gatagagatcatagtgatcagaaagaaaacaatcatatgcgtattcatgtagaagatactcatagaaattcatagtagaatgaataggttgttaaaa 111  Q
    |||| |||||||||||||||| |||||| ||| |||| | ||| |||||| | ||||||||||||||| ||||  |||||||||||| ||| |||||    
T  59001 gataaagatcatagtgatcagcaagaaagcaagcataagagtactcatgtgggagatactcatagaaactcattatagaatgaatagattgataaaa 58905  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 111
Target Start/End: Original strand, 5924801 - 5924897
Alignment:
Q  15 gatagagatcatagtgatcagaaagaaaacaatcatatgcgtattcatgtagaagatactcatagaaattcatagtagaatgaataggttgttaaaa 111  Q
    |||| |||||||||||||||| || ||| ||| |||| | |||||||| ||| ||||||||||||||| ||||  |||||||||||| ||| |||||    
T  5924801 gataaagatcatagtgatcagtaaaaaagcaagcataagagtattcatataggagatactcatagaaactcattatagaatgaatagattgataaaa 5924897  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 111
Target Start/End: Complemental strand, 9487549 - 9487460
Alignment:
Q  20 agatcatagtgatcagaaagaaaacaatcatatgcgtattcatgtagaagatactcatagaaattcatagtagaatgaataggttgttaaaa 111  Q
    |||||||||||||||| |||||| ||| |||| |  |||||||||   ||||||||  ||| |||||| ||||||||||||| ||| |||||    
T  9487549 agatcatagtgatcagcaagaaagcaagcataagattattcatgtgagagatactc--agagattcattgtagaatgaatagattgataaaa 9487460  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 111
Target Start/End: Original strand, 52545118 - 52545214
Alignment:
Q  15 gatagagatcatagtgatcagaaagaaaacaatcatatgcgtattcatgtagaagatactcatagaaattcatagtagaatgaataggttgttaaaa 111  Q
    |||| |||||||||||||||| |||||| | | |||| | ||| |||||| | ||||||||||||||| ||||  |||||||||||| ||| |||||    
T  52545118 gataaagatcatagtgatcagcaagaaagcgagcataagagtactcatgtgggagatactcatagaaactcattatagaatgaatagattgataaaa 52545214  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 99
Target Start/End: Original strand, 20012943 - 20013022
Alignment:
Q  20 agatcatagtgatcagaaagaaaacaatcatatgcgtattcatgtagaagatactcatagaaattcatagtagaatgaat 99  Q
    |||||||||||||||  |||||| ||| |||| | ||| |||||| | ||||||||||||||| ||||  ||||||||||    
T  20012943 agatcatagtgatcaccaagaaagcaagcataagagtactcatgtgggagatactcatagaaactcattatagaatgaat 20013022  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 93
Target Start/End: Complemental strand, 24544835 - 24544757
Alignment:
Q  15 gatagagatcatagtgatcagaaagaaaacaatcatatgcgtattcatgtagaagatactcatagaaattcatagtaga 93  Q
    |||| ||||||||||||| || |||||| ||| |||| | ||| |||||  | ||||||||||||||| ||||||||||    
T  24544835 gataaagatcatagtgataagcaagaaagcaagcataagagtactcatgagggagatactcatagaaactcatagtaga 24544757  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 100
Target Start/End: Original strand, 17148642 - 17148728
Alignment:
Q  14 agatagagatcatagtgatcagaaagaaaacaatcatatgcgtattcatgtagaagatactcatagaaattcatagtagaatgaata 100  Q
    ||||| |||||||| ||||||  || ||| ||| ||||   ||| |||||| | ||||||||||||||||| |||||||||||||||    
T  17148642 agataaagatcataatgatcatcaaaaaagcaaacataacagtactcatgtgggagatactcatagaaatttatagtagaatgaata 17148728  T

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