View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17569_high_46 (Length: 246)
Name: NF17569_high_46
Description: NF17569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17569_high_46 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 18 - 229
Target Start/End: Original strand, 8338315 - 8338526
Alignment:
| Q |
18 |
caatattcagataagaattcgaagtggcggtcacgactacgaaggcttctcttacggatcagatgtatcttctgttataattgacctgcttcacctcaat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||||||||||| |
|
|
| T |
8338315 |
caatattcagataagaattcgaagtggcggccacgactacgaaggcttctcttacgtatcagacatatcttttgttataattgacctgcttcacctcaat |
8338414 |
T |
|
| Q |
118 |
tcagttgatctcaatttacaagatgaaactgcatgggttgaatctggtgcaacaatcggtaagatttattataccattgcaaagnnnnnnnnttctcttg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
8338415 |
tcagttgatctcaatttacaagatgaaactgcatgggttgaatctggtgcaacaatcggtaagatttattataccattgcaaagaaaaacaattctcttg |
8338514 |
T |
|
| Q |
218 |
ctttcccgtctg |
229 |
Q |
| |
|
|||||||||||| |
|
|
| T |
8338515 |
ctttcccgtctg |
8338526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 29 - 201
Target Start/End: Original strand, 36100442 - 36100614
Alignment:
| Q |
29 |
taagaattcgaagtggcggtcacgactacgaaggcttctcttacggatcagatgtatcttctgttataattgacctgcttcacctcaattcagttgatct |
128 |
Q |
| |
|
||||||| ||||||||||| ||||| || ||||||||||| ||| |||||| || ||| ||||||||||||| |||||||||||||||||||||| | |
|
|
| T |
36100442 |
taagaatccgaagtggcggccacgattatgaaggcttctcatacttatcagacgtgccttatgttataattgacttgcttcacctcaattcagttgaagt |
36100541 |
T |
|
| Q |
129 |
caatttacaagatgaaactgcatgggttgaatctggtgcaacaatcggtaagatttattataccattgcaaag |
201 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||||||| | ||||||||||||||||||||| ||||| |
|
|
| T |
36100542 |
caatttacaagatgaaacaacatgggttgaagctggtgcaacacttggtaagatttattataccatttcaaag |
36100614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 22 - 201
Target Start/End: Original strand, 21482426 - 21482605
Alignment:
| Q |
22 |
attcagataagaattcgaagtggcggtcacgactacgaaggcttctcttacggatcagatgtatcttctgttataattgacctgcttcacctcaattcag |
121 |
Q |
| |
|
|||||||| ||||| ||||||||||| ||||||| ||||| ||||| || | |||||| || ||| ||||||||||||| ||||||| |||||||||| |
|
|
| T |
21482426 |
attcagatcagaatccgaagtggcggccacgactttgaaggtttctcatatgtatcagacgtgccttttgttataattgacttgcttcatctcaattcag |
21482525 |
T |
|
| Q |
122 |
ttgatctcaatttacaagatgaaactgcatgggttgaatctggtgcaacaatcggtaagatttattataccattgcaaag |
201 |
Q |
| |
|
||||| ||||||||||||| ||||| |||||||||||||| ||||||||| | || ||| ||||||||||||||| |||| |
|
|
| T |
21482526 |
ttgatgtcaatttacaagaagaaacagcatgggttgaatcaggtgcaacacttggaaagctttattataccattggaaag |
21482605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 22 - 200
Target Start/End: Original strand, 36107694 - 36107872
Alignment:
| Q |
22 |
attcagataagaattcgaagtggcggtcacgactacgaaggcttctcttacggatcagatgtatcttctgttataattgacctgcttcacctcaattcag |
121 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| ||||| || || || | ||||||||| ||| | ||||| ||||| || |||| |||||||||| |
|
|
| T |
36107694 |
attcagattagaattcgaagtggcggtcacgactatgaaggtttttcatatgtatcagatgtgccttttattatacttgacatgtttcatctcaattcag |
36107793 |
T |
|
| Q |
122 |
ttgatctcaatttacaagatgaaactgcatgggttgaatctggtgcaacaatcggtaagatttattataccattgcaaa |
200 |
Q |
| |
|
||||| ||||||||||||| ||| |||||||||||||| ||||||||| | |||||||||||||||| ||||||||| |
|
|
| T |
36107794 |
ttgatatcaatttacaagaatcaacagcatgggttgaatcaggtgcaacacttggtaagatttattataacattgcaaa |
36107872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 22 - 199
Target Start/End: Complemental strand, 36090641 - 36090464
Alignment:
| Q |
22 |
attcagataagaattcgaagtggcggtcacgactacgaaggcttctcttacggatcagatgtatcttctgttataattgacctgcttcacctcaattcag |
121 |
Q |
| |
|
|||||||| ||||||||||||||||| || || |||||||| || || | | |||||| | ||| ||||||||||||| ||||||| ||||||||| |
|
|
| T |
36090641 |
attcagatcagaattcgaagtggcggacatgattacgaaggtttatcaaatgtatcagacatgccttatgttataattgacttgcttcatctcaattcaa |
36090542 |
T |
|
| Q |
122 |
ttgatctcaatttacaagatgaaactgcatgggttgaatctggtgcaacaatcggtaagatttattataccattgcaa |
199 |
Q |
| |
|
||||| |||||||| |||| |||||||||||||||||||| ||||||| | | ||||||||||||||||| ||||||| |
|
|
| T |
36090541 |
ttgatgtcaatttagaagaagaaactgcatgggttgaatcaggtgcaatacttggtaagatttattatacgattgcaa |
36090464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 22 - 196
Target Start/End: Complemental strand, 34971951 - 34971777
Alignment:
| Q |
22 |
attcagataagaattcgaagtggcggtcacgactacgaaggcttctcttacggatcagatgtatcttctgttataattgacctgcttcacctcaattcag |
121 |
Q |
| |
|
||||||||||||||||||||||| || || ||||| ||||| || || || ||||||||| ||| | || || ||||| || ||||||||||||||| |
|
|
| T |
34971951 |
attcagataagaattcgaagtggagggcatgactatgaaggtttatcatatttatcagatgtgccttttattgtacttgacatgtttcacctcaattcag |
34971852 |
T |
|
| Q |
122 |
ttgatctcaatttacaagatgaaactgcatgggttgaatctggtgcaacaatcggtaagatttattataccattg |
196 |
Q |
| |
|
||||| ||||||||||||| ||| ||||||||||||| ||||||||| | ||||||||||||||||| |||| |
|
|
| T |
34971851 |
ttgatgtcaatttacaagaatcaacaacatgggttgaatcaggtgcaacacttggtaagatttattatacaattg |
34971777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 22 - 201
Target Start/End: Original strand, 6838455 - 6838634
Alignment:
| Q |
22 |
attcagataagaattcgaagtggcggtcacgactacgaaggcttctcttacggatcagatgtatcttctgttataattgacctgcttcacctcaattcag |
121 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||| ||||| | || || | ||||||||| ||| ||||||| ||||| || |||| |||||||| | |
|
|
| T |
6838455 |
attcagattagaattcgaagtggtggtcacgactatgaaggttgttcatatgtatcagatgtgccttttgttatacttgacatgtttcatctcaattctg |
6838554 |
T |
|
| Q |
122 |
ttgatctcaatttacaagatgaaactgcatgggttgaatctggtgcaacaatcggtaagatttattataccattgcaaag |
201 |
Q |
| |
|
||||| ||||||||||||| ||| |||||||||||||| ||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
6838555 |
ttgatgtcaatttacaagaatcaacagcatgggttgaatcaggtgcaacacttggtaagatttattataccattgcaaag |
6838634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University