View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17569_high_47 (Length: 245)
Name: NF17569_high_47
Description: NF17569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17569_high_47 |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 13 - 229
Target Start/End: Original strand, 47205081 - 47205308
Alignment:
| Q |
13 |
aatatataaaagtaaaataaaccatcattttactctctgaactaccactttgactcc-----------taaactatgtaaatatattaactagtccataa |
101 |
Q |
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| T |
47205081 |
aatatataaaagtaaaataaaccatcattttagtctctgaactaccactttgactccaatttaatccttaaactatgtgaatatattaactagtccataa |
47205180 |
T |
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| Q |
102 |
actataaaaaatttgccaccctagtctttataattaagattttaaaaactaaattgatgaatttttatttactttaacgactaaattgataaatttcatt |
201 |
Q |
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| T |
47205181 |
actataaaaaatttgccaccctagtctttataattaagattttaaaatctaaattgatgaatttttatttactttaacgactaaattgataaatttcatt |
47205280 |
T |
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| Q |
202 |
taatttagaaatgaacagtagagagaag |
229 |
Q |
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| T |
47205281 |
taatttagaaatgaacagtagagagaag |
47205308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 200
Target Start/End: Complemental strand, 51874841 - 51874775
Alignment:
| Q |
134 |
attaagattttaaaaactaaattgatgaatttttatttactttaacgactaaattgataaatttcat |
200 |
Q |
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| T |
51874841 |
attaagatgttagagactaaattgatgaattttcatatactttagtgactaaattgatggatttcat |
51874775 |
T |
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