View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17569_high_48 (Length: 243)
Name: NF17569_high_48
Description: NF17569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17569_high_48 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 6 - 243
Target Start/End: Original strand, 51036486 - 51036722
Alignment:
| Q |
6 |
aatataatttatatacaaaattcctatgtttggaattcattacaacaataaatgagttagtttgtaaatgaaaatctattttggaactaaaaatttactg |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
51036486 |
aatataatttatatacaaaattcctatgtttggaattcattacaacaataaatgagttagtttgtaaatcaaaatctattttggaactaaaaatttactg |
51036585 |
T |
|
| Q |
106 |
agtaacttattttattaccattattttgaatatgccccactaaagtcccccaaaactaaatccaatggtttcaatcaaatcaatttctaaattttgttgc |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51036586 |
agtaacttattttattaccattattttgaatatg-cccactaaagtcccccaaaactaaatccaatggtttcaatcaaatcaatttctaaattttgttgc |
51036684 |
T |
|
| Q |
206 |
tgcgaatagattgaagtttgaacagaagctaaatcttt |
243 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51036685 |
tgcgaatagattgaagtttgaacagaagctaaatcttt |
51036722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University