View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17569_high_6 (Length: 524)
Name: NF17569_high_6
Description: NF17569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17569_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 7 - 463
Target Start/End: Complemental strand, 4724861 - 4724392
Alignment:
| Q |
7 |
gaaaggaggttgagggagatggagtggagacaacaaatggaaatgcttgagaatgagaggatattgatggaacaaagatggagagaaagggaagaacaaa |
106 |
Q |
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| T |
4724861 |
gaaaggaggttgagggagatggagtggagacaacaaatggaaatgcttgagaatgagaggatattgatggaacaaagatggagagaaagggaagaacaaa |
4724762 |
T |
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| Q |
107 |
ggaggattagagaagaagctagggctgagaatagagatgctttgatcacagctctattaaacaagttagagagacaatagagaggtataacttaa----g |
202 |
Q |
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| T |
4724761 |
ggaggattagagaagaagctagggctgagaagagagatgctttgatcacagctctattaaacaagttagagagacaatagagaggtataacttaattaag |
4724662 |
T |
|
| Q |
203 |
gttttgaattatgatattagtt----------gaaataggttaatattttatagattgcaagagtttaggggtagatttggctaaatttgcagtggtagg |
292 |
Q |
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| T |
4724661 |
gttttgaattatgatattagttttgtatctttgaaataggt-aatattttatagattgcaagagtttaggggtagatttggctaaatttgcaatggtagg |
4724563 |
T |
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| Q |
293 |
gccattttataatttaaaatcttggatatatatagtaattagttaatatgatagtttattttttaactgccggtaatccaagtagaaggcctggattaga |
392 |
Q |
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| T |
4724562 |
gtcattttataatttaaaatcttggatatatatagtaattagttaatatgatagtttattttttaactgccggtaatccaagcagaaggcctggattaga |
4724463 |
T |
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| Q |
393 |
gacaaaaggttacacactactgtactaagcaaggatacaacatgagttctaaaatattgtagtaatctatg |
463 |
Q |
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| T |
4724462 |
ggcaaaaggttacacaatactgtactaagcaaggatacaacatgagttctaaaatattgtagtaatctatg |
4724392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 10 - 145
Target Start/End: Original strand, 25259478 - 25259613
Alignment:
| Q |
10 |
aggaggttgagggagatggagtggagacaacaaatggaaatgcttgagaatgagaggatattgatggaacaaagatggagagaaagggaagaacaaagga |
109 |
Q |
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||||| |||| ||||||||||||||||||| ||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |
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| T |
25259478 |
aggagattgaaggagatggagtggagacaaagaatggaagcattggagaatgagaggataatgatggaacaaagatggagagaaagggaagaacaaagaa |
25259577 |
T |
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| Q |
110 |
ggattagagaagaagctagggctgagaatagagatg |
145 |
Q |
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| T |
25259578 |
ggattagagaagaagctagggctgaaaaaagagatg |
25259613 |
T |
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