View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17569_high_7 (Length: 498)
Name: NF17569_high_7
Description: NF17569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17569_high_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 453; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 16 - 476
Target Start/End: Complemental strand, 47582758 - 47582298
Alignment:
| Q |
16 |
cacagaaagtagaaacataacacctagcagaaacttttttcacgaaaagctaacaccctctcctaattgataaaatattgatgaactaattatattttca |
115 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47582758 |
cacagaaagtagaaacataacatctagcagaaacttttttcacgaaaagctaacaccctctcctaattgataaaatattgatgaactaattatattttca |
47582659 |
T |
|
| Q |
116 |
ttagagggacaggaaaagattattggtgatttcaattcttgttctcccaagttcttacagaagatatatcttttgctagatatagtaatcatgggttgac |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47582658 |
ttagagggacaggaaaagattattggtgatttcaattcttgttctcccaagttcttacagaagatatatcttttgctagatatagtaatcatgggttgac |
47582559 |
T |
|
| Q |
216 |
agtaatatatggtatgattacattgatgtcttattatgtcagaaatggtcgtaaaattaaaaaagtgtaaatgagggataatcaaaagtttaaacctggt |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47582558 |
agtaatatatggtatgattacattgatgtcttattatgtcagaaatggtcgtaaaattaaaaaagtgtaaatgagggataatcaaaagtttaaacctggt |
47582459 |
T |
|
| Q |
316 |
cgagctgaaaggcgaggatttgtgggtgggggcagcacccaagaattattgtcgtctgccttgtggaatggatataattcaaatctaacaccacaactgg |
415 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47582458 |
cgagctgaaaggcgaggatttgtgggtggaggcagcacccaagaattattgtcgtctgccttgtggaatggatataattcaaatctaacaccacaactgg |
47582359 |
T |
|
| Q |
416 |
gatataatattgtgcctccagattttcctctgcagcaactggttggaacttcagctatggc |
476 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47582358 |
gatataatattgtgcctccagattttcctctgcagcaactggttggaacttcagctatggc |
47582298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 188 - 476
Target Start/End: Complemental strand, 47572901 - 47572600
Alignment:
| Q |
188 |
ttgctagatatagtaatcatgggttgacagtaatatatgg-tatgat------tacattgatgtcttattatgtcagaaatggtcgtaaaattaaaaaag |
280 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| |||||| | |||| ||||||||| ||||| ||||| | |||||||||| ||| |
|
|
| T |
47572901 |
ttgctagatatagtagtcatgggttgacagtaatatatgggtatgatattaacttgattgctgtcttattgtgtcacaaatgttagtaaaattaagaaaa |
47572802 |
T |
|
| Q |
281 |
tgtaaatgagggataatcaaaagtttaaacctggtcgagctgaaaggcgaggatttgtgggtgggggcagca------cccaagaattattgtcgtctgc |
374 |
Q |
| |
|
| || |||| |||| ||||||| ||||||||||| |||||||| |||||| |||| ||||| || || |||||| | ||||| || ||| |
|
|
| T |
47572801 |
tatatatgaaggattttcaaaagcttaaacctggtggagctgaagcacgaggaattgttggtggtggaggcggtggcccccaagcaacattgttgtgtgc |
47572702 |
T |
|
| Q |
375 |
cttgtggaatggatataattcaaatctaacaccacaactgggatataatattgtgcctccagattttcctctgcagcaactggttggaacttcagctatg |
474 |
Q |
| |
|
||||||||| |||| ||| |||||| ||| ||||||||||||||| ||||||| |||||||||||||||||||| ||||| ||||||| ||| |||||| |
|
|
| T |
47572701 |
cttgtggaaaggatttaagtcaaatttaagaccacaactgggataaaatattgctcctccagattttcctctgcaacaactagttggaatttctgctatg |
47572602 |
T |
|
| Q |
475 |
gc |
476 |
Q |
| |
|
|| |
|
|
| T |
47572601 |
gc |
47572600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 86 - 229
Target Start/End: Complemental strand, 47570847 - 47570697
Alignment:
| Q |
86 |
taaaatattgatgaactaattatattttcattagagggacaggaaaagattattggtgatttcaattcttgttctc------ccaagttcttacagaag- |
178 |
Q |
| |
|
|||||||||| | ||||| |||| ||||||||||||||| |||||||||||||||||||||||| ||| |||||| ||||||| || |||||| |
|
|
| T |
47570847 |
taaaatattgtttaactatttat-ttttcattagagggataggaaaagattattggtgatttcagttcacgttctcaatgtaccaagttattgcagaaga |
47570749 |
T |
|
| Q |
179 |
-atatatcttttgctagatatagtaatcatgggttgacagtaatatatggta |
229 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
47570748 |
tatatatctcttgctagatatagtatccatgggttgacagtgatatatggta |
47570697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 114
Target Start/End: Complemental strand, 47573269 - 47573217
Alignment:
| Q |
61 |
aaagctaacaccctctcctaattgataaaatattgatgaactaattatattttc |
114 |
Q |
| |
|
|||||||| ||||||||||| || |||||||||||||||||| |||||||||| |
|
|
| T |
47573269 |
aaagctaa-accctctcctagttcttaaaatattgatgaactacttatattttc |
47573217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 86 - 142
Target Start/End: Complemental strand, 47566304 - 47566249
Alignment:
| Q |
86 |
taaaatattgatgaactaattatattttcattagagggacaggaaaagattattggt |
142 |
Q |
| |
|
|||||||||||| ||||| |||| |||||||| |||||| | ||||||||||||||| |
|
|
| T |
47566304 |
taaaatattgattaactatttat-ttttcatttgagggataagaaaagattattggt |
47566249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University