View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17569_low_1 (Length: 657)

Name: NF17569_low_1
Description: NF17569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17569_low_1
NF17569_low_1
[»] chr7 (2 HSPs)
chr7 (18-575)||(33026169-33026728)
chr7 (576-642)||(33026754-33026820)
[»] chr5 (3 HSPs)
chr5 (441-571)||(26917427-26917557)
chr5 (576-636)||(26917337-26917397)
chr5 (433-484)||(34746893-34746944)
[»] chr2 (2 HSPs)
chr2 (576-636)||(24588631-24588691)
chr2 (433-502)||(8295216-8295285)
[»] chr4 (2 HSPs)
chr4 (441-500)||(43381987-43382046)
chr4 (437-500)||(39079736-39079799)
[»] chr8 (1 HSPs)
chr8 (447-500)||(38078177-38078230)
[»] scaffold0140 (1 HSPs)
scaffold0140 (441-500)||(30901-30960)
[»] chr3 (1 HSPs)
chr3 (445-497)||(46016176-46016228)


Alignment Details
Target: chr7 (Bit Score: 379; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 18 - 575
Target Start/End: Original strand, 33026169 - 33026728
Alignment:
Q  18 aaaattgagattacttgacgtgtatacataaccgatgaaataaagtgacaatattgcttgtgttaatgaagaggtgaacgtggcctatcttgctttgcac 117  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33026169 aaaattgagattacttgacgtgtatacataaccgatgaaaaaaagtgacaatattgcttgtgttaatgaagaggtgaacgtggcctatcttgctttgcac 33026268  T
Q  118 atatgctgtgattagtgctgtgtgtgg----tccatgtattgcaatactttcatttctagctaacatttgctaaagtctcgaaccttctatctcaaatcc 213  Q
    |||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  33026269 atatgctgtgattagtgctgtgtgtggtccatccatgtattgcaatactttcatttctagctaacttttgctaaagtctcgaaccttctatctcaaatcc 33026368  T
Q  214 accaaaatatatttattttatgaagnnnnnnnnntgctaaatgatgtcatgagaattaaaaggaaaaatatttcgtcgaaatcccgtgagtatactttat 313  Q
    |||||||||||||||||||||||||         ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  33026369 accaaaatatatttattttatgaag-aaaaaaaatgctaaatgatgtcatgagaattaaaaagaaaaatatttcgtcgaaatcccgtgagtatactttat 33026467  T
Q  314 tttttaagccaatataacattatatgtagagaggaactcaattctcaaacgtcacacttattcatttttaaaagtggattttaacaaataaattacttga 413  Q
    || ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | || ||||||||||||| |||||||||    
T  33026468 ttgttaagacaatataacattatatgtagagacgaactcaattctcaaacgtcacacttattcatttttaataatgaattttaacaaatagattacttga 33026567  T
Q  414 cnnnnnnntacnnnnnnnnacataaataaactcaactcatttcattaataattacattctcaatacaagataacatatgatcatgaacgcggggactagt 513  Q
    |       |||        | ||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||    
T  33026568 c-aaaaaatacttttttttatataaataaattcaactcatttcattaataataacagtctcaatacaagataacatatgatcatgaacgcgggaactagt 33026666  T
Q  514 aaaaaataatgatgcccttattagcctatgtgcaacactgtttacttgtctcctaatataac 575  Q
    |||| ||||||||| ||||||||| |||||||||| |||||||  |||||||||||||||||    
T  33026667 aaaagataatgatgtccttattagtctatgtgcaatactgtttgtttgtctcctaatataac 33026728  T

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Target: chr7; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 576 - 642
Target Start/End: Original strand, 33026754 - 33026820
Alignment:
Q  576 aagtgaagctttgtaggtatcaagaatagtgccaaacatggaattggtgttgagtcccctatctgtg 642  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33026754 aagtgaagctttgtggatatcaagaatagtgccaaacatggaattggtgttgagtcccctatctgtg 33026820  T

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Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 441 - 571
Target Start/End: Complemental strand, 26917557 - 26917427
Alignment:
Q  441 aaactcaactcatttcattaataattacattctcaatacaagataacatatgatcatgaacgcggggactagtaaaaaataatgatgcccttattagcct 540  Q
    ||||| ||||||||||||||||||| ||| ||||||| ||||||  |||||||||||||||  |||||| || | || ||||||| ||||||  |||       
T  26917557 aaacttaactcatttcattaataataacagtctcaatgcaagatggcatatgatcatgaacatggggacaagcataagataatgacgcccttgctagtag 26917458  T
Q  541 atgtgcaacactgtttacttgtctcctaata 571  Q
    ||| |||||||| ||| ||||||||||||||    
T  26917457 atgggcaacactatttgcttgtctcctaata 26917427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 576 - 636
Target Start/End: Complemental strand, 26917397 - 26917337
Alignment:
Q  576 aagtgaagctttgtaggtatcaagaatagtgccaaacatggaattggtgttgagtccccta 636  Q
    ||||||||||||| |  |||||||||||| | ||||||| |||||| ||||||||||||||    
T  26917397 aagtgaagctttgcaaatatcaagaatagcgtcaaacattgaattgttgttgagtccccta 26917337  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 433 - 484
Target Start/End: Complemental strand, 34746944 - 34746893
Alignment:
Q  433 acataaataaactcaactcatttcattaataattacattctcaatacaagat 484  Q
    ||||||||||| |||||||||||||||||| ||  |||| ||||||||||||    
T  34746944 acataaataaaatcaactcatttcattaatcatagcattatcaatacaagat 34746893  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 576 - 636
Target Start/End: Original strand, 24588631 - 24588691
Alignment:
Q  576 aagtgaagctttgtaggtatcaagaatagtgccaaacatggaattggtgttgagtccccta 636  Q
    ||||||||||||  |  |||||||||||| |||||||||||||||||||||||||||||||    
T  24588631 aagtgaagctttacaaatatcaagaatagcgccaaacatggaattggtgttgagtccccta 24588691  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 433 - 502
Target Start/End: Complemental strand, 8295285 - 8295216
Alignment:
Q  433 acataaataaactcaactcatttcattaataattacattctcaatacaagataacatatgatcatgaacg 502  Q
    ||||||| ||||| |||||||||||||| ||||  || ||||||||||||||   ||||| |||||||||    
T  8295285 acataaacaaacttaactcatttcattattaatagcaatctcaatacaagatggtatatgttcatgaacg 8295216  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 441 - 500
Target Start/End: Complemental strand, 43382046 - 43381987
Alignment:
Q  441 aaactcaactcatttcattaataattacattctcaatacaagataacatatgatcatgaa 500  Q
    ||||| |||||||||||| |||||||||| ||||| |||||||||  |||||||||||||    
T  43382046 aaacttaactcatttcatcaataattacagtctcagtacaagatagaatatgatcatgaa 43381987  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 437 - 500
Target Start/End: Complemental strand, 39079799 - 39079736
Alignment:
Q  437 aaataaactcaactcatttcattaataattacattctcaatacaagataacatatgatcatgaa 500  Q
    |||| ||||||  |||||||||||||||| ||  |||||||||||||||  |||||||||||||    
T  39079799 aaatcaactcatttcatttcattaataataacggtctcaatacaagatagtatatgatcatgaa 39079736  T

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Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 447 - 500
Target Start/End: Original strand, 38078177 - 38078230
Alignment:
Q  447 aactcatttcattaataattacattctcaatacaagataacatatgatcatgaa 500  Q
    ||||||||||||||||||| |   |||||||||||||| |||||||||||||||    
T  38078177 aactcatttcattaataataattgtctcaatacaagatgacatatgatcatgaa 38078230  T

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Target: scaffold0140 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 500
Target Start/End: Complemental strand, 30960 - 30901
Alignment:
Q  441 aaactcaactcatttcattaataattacattctcaatacaagataacatatgatcatgaa 500  Q
    ||||| |||||||||||||||| || ||| ||||||||||| || |||||| ||||||||    
T  30960 aaacttaactcatttcattaatgataacaatctcaatacaaaatgacatataatcatgaa 30901  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 445 - 497
Target Start/End: Original strand, 46016176 - 46016228
Alignment:
Q  445 tcaactcatttcattaataattacattctcaatacaagataacatatgatcat 497  Q
    ||||||||||||||||||||| |   |||||||||||||||| || |||||||    
T  46016176 tcaactcatttcattaataataattgtctcaatacaagataatatgtgatcat 46016228  T

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