View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17569_low_10 (Length: 436)
Name: NF17569_low_10
Description: NF17569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17569_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 373; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 1 - 416
Target Start/End: Complemental strand, 1769307 - 1768888
Alignment:
| Q |
1 |
atagagatgctaaacatattttttaaaataaaaagccctaagggaggcattatttaagtaaccc-----tagaaatttatcttgaaaatagaggtcaagc |
95 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||| | |
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| T |
1769307 |
atagagatgctaaacatattttttaaaataaaaagccctaaggg-ggcattgtttaagtaacccataaatagaaatttatcttgaaaatagaggtcaaac |
1769209 |
T |
|
| Q |
96 |
atatcaaaatcataacttcacaattttcaaggtaaaagttattagttttagatgcttaaacaagaaagaagactagtttcatatgtagtatataaatttg |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1769208 |
atatcaaaatcataacttcacaattttcaatgtaaaagttattagttttagatgcttaaacaagaaagaagactagtttcatatgtagtatataaatttg |
1769109 |
T |
|
| Q |
196 |
tagttttcatagacaagaaagactatcattgattttgaagatgttcaaacaggaaaagcactttgtgttgattcatggaggtatccatggtgcatggtgt |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
1769108 |
cagttttcatagacaagaaagactatcattgattttgaagatgttcaaacaggaaaagcactttgtgttgattcatggaggcatccatggtgcatggtgt |
1769009 |
T |
|
| Q |
296 |
tggtataaggttgcaactgatctaaaatcagctggtcataaagtcacagcactagacatggctgcttgtggtaccaatccaaagcagatgcaagaggttc |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1769008 |
tggtataaggttgcaactgatctaaaatcagctggtcataaagtcacagcactagacatggctgcttgtggtaccaatccaaagcagatgcaagaggttc |
1768909 |
T |
|
| Q |
396 |
attcaatttctgaataccatc |
416 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
1768908 |
attcaatttctgaataccatc |
1768888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 251 - 405
Target Start/End: Complemental strand, 1801734 - 1801580
Alignment:
| Q |
251 |
aagcactttgtgttgattcatggaggtatccatggtgcatggtgttggtataaggttgcaactgatctaaaatcagctggtcataaagtcacagcactag |
350 |
Q |
| |
|
|||||||||||| | ||||||||| | ||||||||||||||||||||||||||||||||||| || |||| |||||||||||| || ||| | | | |
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| T |
1801734 |
aagcactttgtgcttgttcatggagctttccatggtgcatggtgttggtataaggttgcaactatgcttaaattagctggtcataatgttacaactattg |
1801635 |
T |
|
| Q |
351 |
acatggctgcttgtggtaccaatccaaagcagatgcaagaggttcattcaatttc |
405 |
Q |
| |
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|| ||||||||||||||| || ||||| ||| | |||||| ||||||||||||| |
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| T |
1801634 |
acttggctgcttgtggtatcagtccaatccaggttcaagagattcattcaatttc |
1801580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 250 - 405
Target Start/End: Complemental strand, 1784925 - 1784770
Alignment:
| Q |
250 |
aaagcactttgtgttgattcatggaggtatccatggtgcatggtgttggtataaggttgcaactgatctaaaatcagctggtcataaagtcacagcacta |
349 |
Q |
| |
|
||||||||||||| | ||||||||| | |||||||| ||||||||||||||||||||||||| || ||||||||||||||||| || ||| | | |
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|
| T |
1784925 |
aaagcactttgtgcttgttcatggagctggccatggtgaatggtgttggtataaggttgcaactatgcttaaatcagctggtcataatgttacaactatt |
1784826 |
T |
|
| Q |
350 |
gacatggctgcttgtggtaccaatccaaagcagatgcaagaggttcattcaatttc |
405 |
Q |
| |
|
||||||||||||| |||| |||||||| || | |||||| ||||||||||||| |
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|
| T |
1784825 |
gacatggctgcttcaggtatcaatccaatacaagttcaagagattcattcaatttc |
1784770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 251 - 400
Target Start/End: Complemental strand, 1777690 - 1777541
Alignment:
| Q |
251 |
aagcactttgtgttgattcatggaggtatccatggtgcatggtgttggtataaggttgcaactgatctaaaatcagctggtcataaagtcacagcactag |
350 |
Q |
| |
|
|||||||||||| | ||||||||| | ||||||||||||||||||||||||||||||||| | ||||||||||||||||| || || || | | |
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|
| T |
1777690 |
aagcactttgtgcttgttcatggagctggccatggtgcatggtgttggtataaggttgcaaccatgttgaaatcagctggtcataatgttaccacaattg |
1777591 |
T |
|
| Q |
351 |
acatggctgcttgtggtaccaatccaaagcagatgcaagaggttcattca |
400 |
Q |
| |
|
| ||||||||||||||| || ||||| ||| | |||||| |||||||| |
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|
| T |
1777590 |
aattggctgcttgtggtatcagtccaatacaggttcaagagattcattca |
1777541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 257 - 405
Target Start/End: Complemental strand, 1772718 - 1772570
Alignment:
| Q |
257 |
tttgtgttgattcatggaggtatccatggtgcatggtgttggtataaggttgcaactgatctaaaatcagctggtcataaagtcacagcactagacatgg |
356 |
Q |
| |
|
|||||| |||||||||| || | ||||||||||||||||||||||||||| | |||| || ||||||||||||||||| || ||| | | || ||| |
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|
| T |
1772718 |
tttgtgctgattcatggtggaagccatggtgcatggtgttggtataaggtggtaactatgcttaaatcagctggtcataatgttacaactattgaattgg |
1772619 |
T |
|
| Q |
357 |
ctgcttgtggtaccaatccaaagcagatgcaagaggttcattcaatttc |
405 |
Q |
| |
|
|||||| |||| |||||||| || | |||||| ||||||||||||| |
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|
| T |
1772618 |
ctgcttcaggtatcaatccaatacaagtccaagagattcattcaatttc |
1772570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 251 - 405
Target Start/End: Original strand, 25727524 - 25727678
Alignment:
| Q |
251 |
aagcactttgtgttgattcatggaggtatccatggtgcatggtgttggtataaggttgcaactgatctaaaatcagctggtcataaagtcacagcactag |
350 |
Q |
| |
|
|||||||||||| | |||||||| | ||||||||||||||| ||||||||||||||||||| || ||||||||||||||||| || ||| | | | |
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|
| T |
25727524 |
aagcactttgtgcttgttcatggacctttccatggtgcatggtcttggtataaggttgcaactatgctgaaatcagctggtcataatgttacaactattg |
25727623 |
T |
|
| Q |
351 |
acatggctgcttgtggtaccaatccaaagcagatgcaagaggttcattcaatttc |
405 |
Q |
| |
|
| |||||| |||||||| || ||||| ||| | |||||| ||||||||||||| |
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|
| T |
25727624 |
aattggctggttgtggtatcagtccaatacaggttcaagagattcattcaatttc |
25727678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 155
Target Start/End: Original strand, 35558883 - 35558962
Alignment:
| Q |
71 |
tttatcttgaaaatagaggtcaagcatatcaaaatcataacttcacaattttcaaggtaaaagttattagttttagatgcttaaa |
155 |
Q |
| |
|
||||||||||||||| | ||||| ||||| |||||||| || |||||| || ||||||||||||| ||||||||||||||| |
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|
| T |
35558883 |
tttatcttgaaaatacaagtcaaacatataaaaatcatgac-----aatttttaacgtaaaagttattaattttagatgcttaaa |
35558962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 318 - 381
Target Start/End: Complemental strand, 6807634 - 6807571
Alignment:
| Q |
318 |
taaaatcagctggtcataaagtcacagcactagacatggctgcttgtggtaccaatccaaagca |
381 |
Q |
| |
|
||||||| ||||| || ||||||||||||||||||||||||||| ||| | | |||||||||| |
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|
| T |
6807634 |
taaaatctgctggacacgaagtcacagcactagacatggctgcttctggaatccatccaaagca |
6807571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 318 - 381
Target Start/End: Complemental strand, 6814419 - 6814356
Alignment:
| Q |
318 |
taaaatcagctggtcataaagtcacagcactagacatggctgcttgtggtaccaatccaaagca |
381 |
Q |
| |
|
||||||| ||||| || ||||||||||||||||||||||||||| ||| | | |||||||||| |
|
|
| T |
6814419 |
taaaatctgctggacacgaagtcacagcactagacatggctgcttctggaatccatccaaagca |
6814356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 158
Target Start/End: Complemental strand, 8633832 - 8633778
Alignment:
| Q |
105 |
tcataacttcacaattttcaaggtaaaagtta-ttagttttagatgcttaaacaa |
158 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||| | | |||||||||||||||||| |
|
|
| T |
8633832 |
tcataactacacaattttcaaggtaaaacttactaaattttagatgcttaaacaa |
8633778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 96 - 158
Target Start/End: Complemental strand, 38902233 - 38902172
Alignment:
| Q |
96 |
atatcaaaatcataacttcacaattttcaaggtaaaagttattagttttagatgcttaaacaa |
158 |
Q |
| |
|
|||| ||| |||||| | |||||||||||| |||||||| |||| |||||||||||||||||| |
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|
| T |
38902233 |
atataaaagtcataattacacaattttcaatgtaaaagt-attatttttagatgcttaaacaa |
38902172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 106 - 158
Target Start/End: Original strand, 4552219 - 4552271
Alignment:
| Q |
106 |
cataacttcacaattttcaaggtaaaagttattagttttagatgcttaaacaa |
158 |
Q |
| |
|
||||||| |||||||||||| |||| | ||| || |||||||||||||||||| |
|
|
| T |
4552219 |
cataactacacaattttcaacgtaataattactatttttagatgcttaaacaa |
4552271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 152
Target Start/End: Original strand, 15064578 - 15064654
Alignment:
| Q |
77 |
ttgaaaatagaggtcaagcatatc-aaaatcataacttcacaattttcaaggtaaaagttattagttttagatgctt |
152 |
Q |
| |
|
||||||||| | ||||| ||||| |||||||||| | |||||||||||| ||||||||| || |||||||||||| |
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|
| T |
15064578 |
ttgaaaatacaagtcaaacatatgtaaaatcataaatacacaattttcaatataaaagttactacttttagatgctt |
15064654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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