View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17569_low_11 (Length: 417)

Name: NF17569_low_11
Description: NF17569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17569_low_11
NF17569_low_11
[»] chr3 (10 HSPs)
chr3 (18-329)||(19770490-19770801)
chr3 (137-325)||(18356980-18357165)
chr3 (135-325)||(18342506-18342694)
chr3 (138-233)||(6006119-6006214)
chr3 (138-223)||(31228209-31228294)
chr3 (138-233)||(17790113-17790208)
chr3 (138-233)||(19098555-19098650)
chr3 (138-194)||(31661057-31661113)
chr3 (138-194)||(31973498-31973554)
chr3 (165-233)||(49499371-49499439)
[»] scaffold0341 (2 HSPs)
scaffold0341 (145-300)||(2029-2184)
scaffold0341 (145-300)||(9685-9839)
[»] chr1 (10 HSPs)
chr1 (145-300)||(6508004-6508159)
chr1 (138-282)||(40490098-40490242)
chr1 (135-282)||(49702338-49702485)
chr1 (137-282)||(24065125-24065270)
chr1 (120-233)||(4614851-4614963)
chr1 (172-212)||(29115393-29115433)
chr1 (138-233)||(30033543-30033638)
chr1 (160-204)||(5185378-5185422)
chr1 (138-206)||(9361755-9361823)
chr1 (138-206)||(24083363-24083431)
[»] chr7 (8 HSPs)
chr7 (339-417)||(30146935-30147013)
chr7 (137-282)||(33611116-33611261)
chr7 (165-233)||(48100851-48100919)
chr7 (138-237)||(3205215-3205314)
chr7 (138-205)||(13015047-13015114)
chr7 (138-233)||(32480176-32480271)
chr7 (172-237)||(44435409-44435474)
chr7 (138-206)||(17238757-17238825)
[»] chr5 (5 HSPs)
chr5 (175-325)||(11961081-11961231)
chr5 (165-335)||(19237525-19237695)
chr5 (176-282)||(23622432-23622538)
chr5 (138-233)||(22292340-22292435)
chr5 (138-233)||(19741614-19741709)
[»] chr4 (5 HSPs)
chr4 (138-335)||(13685867-13686064)
chr4 (138-233)||(30859324-30859419)
chr4 (138-233)||(55227573-55227668)
chr4 (163-212)||(37061158-37061207)
chr4 (138-194)||(16431439-16431495)
[»] chr2 (5 HSPs)
chr2 (138-214)||(2058688-2058764)
chr2 (137-206)||(11818526-11818595)
chr2 (138-205)||(16206528-16206595)
chr2 (138-192)||(20661195-20661249)
chr2 (220-325)||(11553195-11553300)
[»] chr6 (6 HSPs)
chr6 (137-304)||(23508933-23509100)
chr6 (165-325)||(16416470-16416630)
chr6 (138-205)||(10910519-10910586)
chr6 (124-194)||(1493313-1493382)
chr6 (138-194)||(9959227-9959283)
chr6 (138-194)||(16890210-16890266)
[»] chr8 (4 HSPs)
chr8 (138-233)||(14505682-14505777)
chr8 (137-282)||(2246804-2246949)
chr8 (138-194)||(14657790-14657846)
chr8 (138-204)||(37590121-37590187)
[»] scaffold0011 (1 HSPs)
scaffold0011 (138-206)||(191088-191156)


Alignment Details
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 18 - 329
Target Start/End: Original strand, 19770490 - 19770801
Alignment:
Q  18 aaataaagctaaaaatagtaagataattcatctgtaactctgagaaatcatagtcttgaagcatcttaatgctgatgtctttaatgaaaccagaagcttg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19770490 aaataaagctaaaaatagtaagataattcatctgtaactctgagaaatcatagtcttgaagcatcttaatgctgatgtctttaatgaaaccagaagcttg 19770589  T
Q  118 caagaaacgtggcctctttctgcaagagcatgagaaaccctgttggtttgtcacctaacaaactacaccttagagttggtaaagaaagagctgaataagg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19770590 caagaaacgtggcctctttctgcaagagcatgagaaaccctgttggtttgtcacctaacaaactacaccttagagttggtaaagaaagagctgaataagg 19770689  T
Q  218 aacgacatgaagaaatgataaaccaaaattcagaagtgtcgtcccgagtagcatgaaaggcatcagacgtcatcttggaatccatttgaaagacaacgtt 317  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19770690 aacgacatgaagaaataataaaccaaaattcagaagtgtcgtcccgagtagcatgaaaggcatcagacgtcatcttggaatccatttgaaagacaacgtt 19770789  T
Q  318 atcaaatttcat 329  Q
    ||||||||||||    
T  19770790 atcaaatttcat 19770801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 137 - 325
Target Start/End: Complemental strand, 18357165 - 18356980
Alignment:
Q  137 ctgcaagagcatgagaaaccctgtt-ggtttgtcacctaacaaactacaccttagagttggtaaagaaagagctgaataaggaacgacatgaagaaatga 235  Q
    ||||||||||||||| || || ||| || || |||||||||||||| |||| |||||||||||||||||||  |||||||||||||||||||| |||| |    
T  18357165 ctgcaagagcatgagcaatcccgtttggcttatcacctaacaaactccaccctagagttggtaaagaaagatttgaataaggaacgacatgaataaataa 18357066  T
Q  236 taaaccaaaattcagaagtgtcgtcccgagtagcatgaaaggcatcagacgtcatcttggaatccatttgaaagacaacgttatcaaatt 325  Q
    || | | |||| ||||| |||||||| ||||||||||     ||||||||||||||||||||||  ||| |||| |||||||||||||||    
T  18357065 tacaacgaaatacagaattgtcgtcctgagtagcatgt----catcagacgtcatcttggaatctgtttcaaagtcaacgttatcaaatt 18356980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 135 - 325
Target Start/End: Complemental strand, 18342694 - 18342506
Alignment:
Q  135 ttctgcaagagcatgagaaaccctgtt-ggtttgtcacctaacaaactacaccttagagtt-ggtaaagaaagagctgaataaggaacgacatgaagaaa 232  Q
    |||||||| |||||||| || || ||| || |||||  |||||||||| |||| ||||||| |||||||||| | |||||||| ||||||||||||||||    
T  18342694 ttctgcaatagcatgagcaatcccgtttggcttgtcgtctaacaaacttcaccctagagtttggtaaagaaaaatctgaataacgaacgacatgaagaaa 18342595  T
Q  233 tgataaaccaaaattcagaagtgtcgtcccgagtagcatgaaaggcatcagacgtcatcttggaatccatttgaaagacaacgttatcaaatt 325  Q
    | ||| | | |||||||||| |||||||| |||||||||    ||||||||||||||||||||||||  ||| |||| |||||||||||||||    
T  18342594 taatacaacgaaattcagaattgtcgtcctgagtagcat----ggcatcagacgtcatcttggaatctgtttcaaagtcaacgttatcaaatt 18342506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 138 - 233
Target Start/End: Original strand, 6006119 - 6006214
Alignment:
Q  138 tgcaagagcatgagaaaccctgttggtttgtcacctaacaaactacaccttagagttggtaaagaaagagctgaataaggaacgacatgaagaaat 233  Q
    |||||||||||||||||||  ||||| ||||| ||||||||||| |||| ||||||| | ||||||||  ||||| || ||||||||||| |||||    
T  6006119 tgcaagagcatgagaaaccacgttggcttgtcgcctaacaaactccaccctagagttagaaaagaaagtactgaacaaagaacgacatgaggaaat 6006214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 223
Target Start/End: Complemental strand, 31228294 - 31228209
Alignment:
Q  138 tgcaagagcatgagaaaccctgttggtttgtcacctaacaaactacaccttagagttggtaaagaaagagctgaataaggaacgac 223  Q
    |||||||||||||| ||||  ||||| ||||| ||||||||||| |||| ||||||| | ||||||||  |||||||| |||||||    
T  31228294 tgcaagagcatgagcaaccacgttggcttgtcgcctaacaaactccaccctagagttagaaaagaaagtactgaataaagaacgac 31228209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 138 - 233
Target Start/End: Complemental strand, 17790208 - 17790113
Alignment:
Q  138 tgcaagagcatgagaaaccctgttggtttgtcacctaacaaactacaccttagagttggtaaagaaagagctgaataaggaacgacatgaagaaat 233  Q
    ||||||||| |||| ||||  ||||| ||||| ||||||||||| |||| ||||||| | ||||||||  ||||| || |||||||| || |||||    
T  17790208 tgcaagagcgtgagcaaccacgttggcttgtcgcctaacaaactccaccctagagttagaaaagaaagtactgaacaaagaacgacaggaggaaat 17790113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 138 - 233
Target Start/End: Complemental strand, 19098650 - 19098555
Alignment:
Q  138 tgcaagagcatgagaaaccctgttggtttgtcacctaacaaactacaccttagagttggtaaagaaagagctgaataaggaacgacatgaagaaat 233  Q
    ||||||||| |||| ||||  ||||| ||||| ||||||||||| |||| ||||||| | ||||||||  ||||| || |||||||| || |||||    
T  19098650 tgcaagagcgtgagcaaccacgttggcttgtcgcctaacaaactccaccctagagttagaaaagaaagtactgaacaaagaacgacaggaggaaat 19098555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 194
Target Start/End: Original strand, 31661057 - 31661113
Alignment:
Q  138 tgcaagagcatgagaaaccctgttggtttgtcacctaacaaactacaccttagagtt 194  Q
    |||||||||||||| ||||  ||||| ||||| ||||||||||| |||| |||||||    
T  31661057 tgcaagagcatgagcaaccgcgttggcttgtcgcctaacaaactccaccctagagtt 31661113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 194
Target Start/End: Complemental strand, 31973554 - 31973498
Alignment:
Q  138 tgcaagagcatgagaaaccctgttggtttgtcacctaacaaactacaccttagagtt 194  Q
    |||||||||||||| ||||  ||||| ||||| ||||||||||| |||| |||||||    
T  31973554 tgcaagagcatgagcaaccgcgttggcttgtcgcctaacaaactccaccatagagtt 31973498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 165 - 233
Target Start/End: Complemental strand, 49499439 - 49499371
Alignment:
Q  165 ttgtcacctaacaaactacaccttagagttggtaaagaaagagctgaataaggaacgacatgaagaaat 233  Q
    ||||| |||| |||||| |||| ||||||||||||| ||||||||||| |  || ||||| ||||||||    
T  49499439 ttgtcgcctagcaaactccaccctagagttggtaaaaaaagagctgaacagagatcgacaagaagaaat 49499371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 145 - 300
Target Start/End: Original strand, 2029 - 2184
Alignment:
Q  145 gcatgagaaaccctgttggtttgtcacctaacaaactacaccttagagttggtaaagaaagagctgaataaggaacgacatgaagaaatgataaaccaaa 244  Q
    ||||||| |||| ||||||||||||  |||||||| | || | ||||||| ||||| |||||| ||||||||||||||||||||| ||| ||| ||| ||    
T  2029 gcatgagcaaccatgttggtttgtcttctaacaaaattcatcctagagttagtaaaaaaagagttgaataaggaacgacatgaagtaataatacacccaa 2128  T
Q  245 attcagaagtgtcgtcccgagtagcatgaaaggcatcagacgtcatcttggaatcc 300  Q
    ||||||||||||||||||||||||||   || |||||| ||||||  |||||||||    
T  2129 attcagaagtgtcgtcccgagtagcacagaaagcatcacacgtcaatttggaatcc 2184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 145 - 300
Target Start/End: Original strand, 9685 - 9839
Alignment:
Q  145 gcatgagaaaccctgttggtttgtcacctaacaaactacaccttagagttggtaaagaaagagctgaataaggaacgacatgaagaaatgataaaccaaa 244  Q
    ||||||| |||| ||||||||||||  |||||||| | || | ||||||| ||||| |||||| ||||||||||||||||||||| ||| ||| ||| ||    
T  9685 gcatgagcaaccatgttggtttgtcttctaacaaaattcatcctagagttagtaaa-aaagagttgaataaggaacgacatgaagtaataatacacccaa 9783  T
Q  245 attcagaagtgtcgtcccgagtagcatgaaaggcatcagacgtcatcttggaatcc 300  Q
    ||||||||||||||||||||||||||   || |||||| ||||||  |||||||||    
T  9784 attcagaagtgtcgtcccgagtagcacagaaagcatcacacgtcaatttggaatcc 9839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 145 - 300
Target Start/End: Original strand, 6508004 - 6508159
Alignment:
Q  145 gcatgagaaaccctgttggtttgtcacctaacaaactacaccttagagttggtaaagaaagagctgaataaggaacgacatgaagaaatgataaaccaaa 244  Q
    ||||||| |||| ||||||||||||  |||||||| | || | ||||||| ||||| |||||| ||||||||||||||||||||| ||| ||| ||| ||    
T  6508004 gcatgagcaaccatgttggtttgtcttctaacaaaattcatcctagagttagtaaaaaaagagttgaataaggaacgacatgaagtaataatacacccaa 6508103  T
Q  245 attcagaagtgtcgtcccgagtagcatgaaaggcatcagacgtcatcttggaatcc 300  Q
    ||||||||||||||||||||||||||   || |||||| ||||||  |||||||||    
T  6508104 attcagaagtgtcgtcccgagtagcacagaaagcatcacacgtcaatttggaatcc 6508159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 138 - 282
Target Start/End: Original strand, 40490098 - 40490242
Alignment:
Q  138 tgcaagagcatgagaaaccctgttggtttgtcacctaacaaactacaccttagagttggtaaagaaagagctgaataaggaacgacatgaagaaatgata 237  Q
    ||||||||||||||  |||   |||||||||| ||||||||||| |||| ||||||| | |||||| ||||| ||||| ||||||||||| |||||||||    
T  40490098 tgcaagagcatgagcgacctcattggtttgtcgcctaacaaactccaccctagagttagaaaagaatgagctaaataaagaacgacatgaggaaatgata 40490197  T
Q  238 aaccaaaattcagaagtgtcgtcccgagtagcatgaaaggcatca 282  Q
     | | ||||||  ||||||||| || ||||||| |||| ||||||    
T  40490198 cagccaaattcgaaagtgtcgttcctagtagcaagaaaagcatca 40490242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 135 - 282
Target Start/End: Complemental strand, 49702485 - 49702338
Alignment:
Q  135 ttctgcaagagcatgagaaaccctgttggtttgtcacctaacaaactacaccttagagttggtaaagaaagagctgaataaggaacgacatgaagaaatg 234  Q
    |||||||| | |||||||||||| ||||   |||||||||||||||| || | ||||||||||||||||| | | ||| |  || ||||||||||| ||     
T  49702485 ttctgcaataacatgagaaaccccgttgacatgtcacctaacaaacttcatcctagagttggtaaagaaataaccgaaaagagaccgacatgaagagata 49702386  T
Q  235 ataaaccaaaattcagaagtgtcgtcccgagtagcatgaaaggcatca 282  Q
    ||| ||  ||||| |||||||||||| |||||||| ||||| ||||||    
T  49702385 atacactcaaatttagaagtgtcgtctcgagtagcgtgaaaagcatca 49702338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 137 - 282
Target Start/End: Complemental strand, 24065270 - 24065125
Alignment:
Q  137 ctgcaagagcatgagaaaccctgttggtttgtcacctaacaaactacaccttagagttggtaaagaaagagctgaataaggaacgacatgaagaaatgat 236  Q
    |||||||| |||||| ||||  ||| | ||||| ||||||||||| |||| || |||||||||||||||| || || |  || || ||||| || || ||    
T  24065270 ctgcaagaacatgagcaacctcgtttgcttgtcgcctaacaaactccaccctaaagttggtaaagaaagaactaaacagagaccggcatgatgagataat 24065171  T
Q  237 aaaccaaaattcagaagtgtcgtcccgagtagcatgaaaggcatca 282  Q
      ||| ||||||||||||||| || ||| ||||||| |||||||||    
T  24065170 gcacccaaattcagaagtgtcatctcgattagcatggaaggcatca 24065125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 120 - 233
Target Start/End: Complemental strand, 4614963 - 4614851
Alignment:
Q  120 agaaacgtggcctctttctgcaagagcatgagaaaccctgttggtttgtcacctaacaaactacaccttagagttggtaaagaaagagctgaataaggaa 219  Q
    ||||||||||| |||| |||||||  |||||| ||||   || ||||||| |||| |||||| |||| ||||||||||||| |||||| ||||||  ||     
T  4614963 agaaacgtggcttctt-ctgcaagcacatgagcaaccacatttgtttgtcgcctagcaaactccaccctagagttggtaaaaaaagagttgaatagagat 4614865  T
Q  220 cgacatgaagaaat 233  Q
    ||||| ||||||||    
T  4614864 cgacaagaagaaat 4614851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 212
Target Start/End: Complemental strand, 29115433 - 29115393
Alignment:
Q  172 ctaacaaactacaccttagagttggtaaagaaagagctgaa 212  Q
    ||||||||||||||| ||||||||||||||||||| |||||    
T  29115433 ctaacaaactacaccctagagttggtaaagaaagaactgaa 29115393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 138 - 233
Target Start/End: Complemental strand, 30033638 - 30033543
Alignment:
Q  138 tgcaagagcatgagaaaccctgttggtttgtcacctaacaaactacaccttagagttggtaaagaaagagctgaataaggaacgacatgaagaaat 233  Q
    |||||||||||||| ||||  | ||| ||||| ||||||||||| |||| ||||||| | ||||||||   |||| || ||||||||||| |||||    
T  30033638 tgcaagagcatgagcaaccacgctggcttgtcgcctaacaaactccaccctagagttagaaaagaaagtattgaacaaagaacgacatgaggaaat 30033543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 160 - 204
Target Start/End: Original strand, 5185378 - 5185422
Alignment:
Q  160 ttggtttgtcacctaacaaactacaccttagagttggtaaagaaa 204  Q
    |||||||||| | ||||||||| |||| |||||||||||||||||    
T  5185378 ttggtttgtcgcttaacaaactccaccctagagttggtaaagaaa 5185422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 206
Target Start/End: Complemental strand, 9361823 - 9361755
Alignment:
Q  138 tgcaagagcatgagaaaccctgttggtttgtcacctaacaaactacaccttagagttggtaaagaaaga 206  Q
    |||||| ||||||| ||||  ||||| ||||| ||||||||||| |||| ||||||| | |||||||||    
T  9361823 tgcaagtgcatgagcaaccgcgttggcttgtcgcctaacaaactccaccctagagttagaaaagaaaga 9361755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 206
Target Start/End: Complemental strand, 24083431 - 24083363
Alignment:
Q  138 tgcaagagcatgagaaaccctgttggtttgtcacctaacaaactacaccttagagttggtaaagaaaga 206  Q
    |||||| ||||||| ||||  ||||| ||||| ||||||||||| |||| ||||||| | |||||||||    
T  24083431 tgcaagtgcatgagcaaccgcgttggcttgtcgcctaacaaactccaccgtagagttagaaaagaaaga 24083363  T

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Target: chr7 (Bit Score: 59; Significance: 7e-25; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 339 - 417
Target Start/End: Complemental strand, 30147013 - 30146935
Alignment:
Q  339 ctaaaaaatggcatataagtcaaactgtgtctattaaactggcaccccaatcgatccgcagtgaagtcggctagggttt 417  Q
    ||||||||||||||||||| |||||| ||||||||||||||||| ||||||| | ||||||||||||||||||||||||    
T  30147013 ctaaaaaatggcatataagacaaactttgtctattaaactggcaacccaatctagccgcagtgaagtcggctagggttt 30146935  T

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Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 137 - 282
Target Start/End: Original strand, 33611116 - 33611261
Alignment:
Q  137 ctgcaagagcatgagaaaccctgttggtttgtcacctaacaaactacaccttagagttggtaaagaaagagctgaataaggaacgacatgaagaaatgat 236  Q
    |||||||| |||||  ||||||||| | ||||| ||||||||||| |||| ||||||||||||||||||| ||||| |  || |||||||| ||  | ||    
T  33611116 ctgcaagaacatgaacaaccctgtttgcttgtcgcctaacaaactccaccctagagttggtaaagaaagaactgaacagagaccgacatgatgaggtaat 33611215  T
Q  237 aaaccaaaattcagaagtgtcgtcccgagtagcatgaaaggcatca 282  Q
      ||||||||||| |||||||||| ||| ||||||| || ||||||    
T  33611216 gcaccaaaattcataagtgtcgtctcgattagcatggaatgcatca 33611261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 233
Target Start/End: Original strand, 48100851 - 48100919
Alignment:
Q  165 ttgtcacctaacaaactacaccttagagttggtaaagaaagagctgaataaggaacgacatgaagaaat 233  Q
    ||||| |||| |||||| |||| ||||||||||||| |||||||||||||  || ||||| ||||||||    
T  48100851 ttgtcgcctagcaaactccaccctagagttggtaaaaaaagagctgaatagagatcgacaagaagaaat 48100919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 138 - 237
Target Start/End: Original strand, 3205215 - 3205314
Alignment:
Q  138 tgcaagagcatgagaaaccctgttggtttgtcacctaacaaactacaccttagagttggtaaagaaagagctgaataaggaacgacatgaagaaatgata 237  Q
    |||||||||||||| ||||  ||||| ||||| ||||||||||| |||| || |||| | |||||||   ||||| ||  ||||||| ||||||||||||    
T  3205215 tgcaagagcatgagcaaccacgttgggttgtcgcctaacaaactccaccataaagttagaaaagaaattactgaacaacaaacgacaagaagaaatgata 3205314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 138 - 205
Target Start/End: Original strand, 13015047 - 13015114
Alignment:
Q  138 tgcaagagcatgagaaaccctgttggtttgtcacctaacaaactacaccttagagttggtaaagaaag 205  Q
    |||||||||||||| ||||  ||||| ||||| ||||||||||||||||  |||||||| ||| ||||    
T  13015047 tgcaagagcatgagcaacctcgttggcttgtcgcctaacaaactacacccgagagttggaaaataaag 13015114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 138 - 233
Target Start/End: Complemental strand, 32480271 - 32480176
Alignment:
Q  138 tgcaagagcatgagaaaccctgttggtttgtcacctaacaaactacaccttagagttggtaaagaaagagctgaataaggaacgacatgaagaaat 233  Q
    |||||||| ||||| ||||  ||||| ||||| ||||||||||| |||| ||||||| | ||||||||  ||||| || |||||||| || |||||    
T  32480271 tgcaagagtatgagcaaccacgttggcttgtcgcctaacaaactccaccctagagttagaaaagaaagtactgaacaaagaacgacaggaggaaat 32480176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 237
Target Start/End: Complemental strand, 44435474 - 44435409
Alignment:
Q  172 ctaacaaactacaccttagagttggtaaagaaagagctgaataaggaacgacatgaagaaatgata 237  Q
    |||||||||| || | || ||||| |||||||||||||||| |||||  ||| |||||||||||||    
T  44435474 ctaacaaacttcatcctaaagttgataaagaaagagctgaacaaggagggacgtgaagaaatgata 44435409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 206
Target Start/End: Original strand, 17238757 - 17238825
Alignment:
Q  138 tgcaagagcatgagaaaccctgttggtttgtcacctaacaaactacaccttagagttggtaaagaaaga 206  Q
    |||||| ||||||| ||||  ||||| ||||| ||||||||||| |||| ||||||| | |||||||||    
T  17238757 tgcaagtgcatgagcaaccgcgttggcttgtcgcctaacaaactccaccctagagttagaaaagaaaga 17238825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 175 - 325
Target Start/End: Original strand, 11961081 - 11961231
Alignment:
Q  175 acaaactacaccttagagttggtaaagaaagagctgaataaggaacgacatgaagaaatgataaaccaaaattcagaagtgtcgtcccgagtagcatgaa 274  Q
    ||||||| ||||||| |||| | ||| ||| |||| |||||||| |||  ||||||||||||| | | ||||||  |||||| ||||||||||||||| |    
T  11961081 acaaactccaccttatagttagaaaataaatagctaaataaggagcgatttgaagaaatgatacaaccaaattcgtaagtgtagtcccgagtagcatgga 11961180  T
Q  275 aggcatcagacgtcatcttggaatccatttgaaagacaacgttatcaaatt 325  Q
    ||||||||||||||  |||||| ||| ||| |||  |||||||||| ||||    
T  11961181 aggcatcagacgtcggcttggagtccgtttcaaaatcaacgttatcgaatt 11961231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 165 - 335
Target Start/End: Complemental strand, 19237695 - 19237525
Alignment:
Q  165 ttgtcacctaacaaactacaccttagagttggtaaagaaagagctgaataaggaacgacatgaagaaatgataaaccaaaattcagaagtgtcgtcccga 264  Q
    ||||| ||||| ||||| |||| ||||||||||||||||||| | ||| |  || |||||||| || || ||  ||| ||||||| ||||||| || |||    
T  19237695 ttgtcgcctaataaactccaccctagagttggtaaagaaagaaccgaagagagatcgacatgatgagataatgcacccaaattcaaaagtgtcatctcga 19237596  T
Q  265 gtagcatgaaaggcatcagacgtcatcttggaatccatttgaaagacaacgttatcaaatttcatctcact 335  Q
      |||||| ||||||||| | || | |||||||||| ||| |||  ||||||| ||||||| ||| |||||    
T  19237595 tgagcatggaaggcatcacaagtaagcttggaatccgtttcaaaatcaacgttgtcaaattgcatatcact 19237525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 176 - 282
Target Start/End: Complemental strand, 23622538 - 23622432
Alignment:
Q  176 caaactacaccttagagttggtaaagaaagagctgaataaggaacgacatgaagaaatgataaaccaaaattcagaagtgtcgtcccgagtagcatgaaa 275  Q
    |||||| |||| |||||||||||||  |||||||||| |  || ||||| |||||||| ||  ||| |||||||||| ||||||| ||||||| ||||||    
T  23622538 caaactccaccctagagttggtaaaagaagagctgaaaagagatcgacaagaagaaataatgcacccaaattcagaaatgtcgtctcgagtagaatgaaa 23622439  T
Q  276 ggcatca 282  Q
     ||||||    
T  23622438 agcatca 23622432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 138 - 233
Target Start/End: Complemental strand, 22292435 - 22292340
Alignment:
Q  138 tgcaagagcatgagaaaccctgttggtttgtcacctaacaaactacaccttagagttggtaaagaaagagctgaataaggaacgacatgaagaaat 233  Q
    |||||||||||||| ||||  ||||| ||||| ||||||||||| |||| ||||||| | ||||||||  ||||| || |||||||| || |||||    
T  22292435 tgcaagagcatgagcaaccacgttggcttgtcgcctaacaaactccaccctagagttagaaaagaaagtactgaacaaagaacgacaggaggaaat 22292340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 138 - 233
Target Start/End: Original strand, 19741614 - 19741709
Alignment:
Q  138 tgcaagagcatgagaaaccctgttggtttgtcacctaacaaactacaccttagagttggtaaagaaagagctgaataaggaacgacatgaagaaat 233  Q
    |||||||||||||| ||||| ||| | ||||| ||||||||| | |||| ||||||||| ||| |||||  | || || |||||||| ||||||||    
T  19741614 tgcaagagcatgagcaaccccgttagcttgtcgcctaacaaatttcaccctagagttggaaaataaagaagtaaacaaagaacgacaagaagaaat 19741709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 138 - 335
Target Start/End: Complemental strand, 13686064 - 13685867
Alignment:
Q  138 tgcaagagcatgagaaaccctgttggtttgtcacctaacaaactacaccttagagttggtaaagaaagagctgaataaggaacgacatgaagaaatgata 237  Q
    ||||||| |||||| ||||| ||| | ||||| ||||||||||| |||| ||||||||||||| ||||| ||||| || || |||||||| || || ||     
T  13686064 tgcaagaacatgagcaaccccgtttgcttgtcgcctaacaaactccaccctagagttggtaaacaaagaactgaacaaagaccgacatgatgagataatg 13685965  T
Q  238 aaccaaaattcagaagtgtcgtcccgagtagcatgaaaggcatcagacgtcatcttggaatccatttgaaagacaacgttatcaaatttcatctcact 335  Q
     ||| |||||||||||||||| |  || ||||||| || |||||| | || | |||||||||| ||| |||  | ||||| ||||||| ||| |||||    
T  13685964 cacccaaattcagaagtgtcgccttgattagcatggaatgcatcacaagtaagcttggaatccgtttcaaaaccgacgttgtcaaattgcatgtcact 13685867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 138 - 233
Target Start/End: Complemental strand, 30859419 - 30859324
Alignment:
Q  138 tgcaagagcatgagaaaccctgttggtttgtcacctaacaaactacaccttagagttggtaaagaaagagctgaataaggaacgacatgaagaaat 233  Q
    |||||||||||||| ||||  ||||| ||||| ||||||||||| |||| ||||||| | ||||||||  ||||| || ||||||||||| |||||    
T  30859419 tgcaagagcatgagcaaccacgttggcttgtcgcctaacaaactccaccctagagttagaaaagaaagtactgaacaaagaacgacatgaggaaat 30859324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 138 - 233
Target Start/End: Complemental strand, 55227668 - 55227573
Alignment:
Q  138 tgcaagagcatgagaaaccctgttggtttgtcacctaacaaactacaccttagagttggtaaagaaagagctgaataaggaacgacatgaagaaat 233  Q
    |||||||||||||| ||||  ||||||||||| ||||||||||| |||| ||||||| | ||||||||  ||||| || |||||||| || |||||    
T  55227668 tgcaagagcatgagcaaccacgttggtttgtcgcctaacaaactccaccctagagttagaaaagaaagtactgaacaaagaacgacaggaggaaat 55227573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 212
Target Start/End: Original strand, 37061158 - 37061207
Alignment:
Q  163 gtttgtcacctaacaaactacaccttagagttggtaaagaaagagctgaa 212  Q
    |||||||||||| |||||| |||| |||||||||||||  ||||||||||    
T  37061158 gtttgtcacctagcaaactccaccctagagttggtaaaagaagagctgaa 37061207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 194
Target Start/End: Original strand, 16431439 - 16431495
Alignment:
Q  138 tgcaagagcatgagaaaccctgttggtttgtcacctaacaaactacaccttagagtt 194  Q
    |||||||||||||  ||||  ||||||||||| ||||||||||| |||| |||||||    
T  16431439 tgcaagagcatgaacaacctcgttggtttgtcgcctaacaaactccaccctagagtt 16431495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 7e-19; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 138 - 214
Target Start/End: Complemental strand, 2058764 - 2058688
Alignment:
Q  138 tgcaagagcatgagaaaccctgttggtttgtcacctaacaaactacaccttagagttggtaaagaaagagctgaata 214  Q
    |||||||||||||| |||| |||||||||||| ||||||||||| |||||||||||| | |||||||||||| ||||    
T  2058764 tgcaagagcatgagtaaccgtgttggtttgtcgcctaacaaactccaccttagagttcgaaaagaaagagctaaata 2058688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 137 - 206
Target Start/End: Original strand, 11818526 - 11818595
Alignment:
Q  137 ctgcaagagcatgagaaaccctgttggtttgtcacctaacaaactacaccttagagttggtaaagaaaga 206  Q
    |||||||| |||||| ||||  ||| | ||||| ||||||||||| |||| |||||||||||||||||||    
T  11818526 ctgcaagaacatgagcaacctcgtttgcttgtcgcctaacaaactccaccctagagttggtaaagaaaga 11818595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 138 - 205
Target Start/End: Complemental strand, 16206595 - 16206528
Alignment:
Q  138 tgcaagagcatgagaaaccctgttggtttgtcacctaacaaactacaccttagagttggtaaagaaag 205  Q
    |||||||||||||| ||||  ||||| ||||| ||||||||||| |||| ||||||| | ||||||||    
T  16206595 tgcaagagcatgagcaaccacgttggcttgtcgcctaacaaactccaccctagagttagaaaagaaag 16206528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 192
Target Start/End: Complemental strand, 20661249 - 20661195
Alignment:
Q  138 tgcaagagcatgagaaaccctgttggtttgtcacctaacaaactacaccttagag 192  Q
    |||||||||||||| |||||||||   ||||||||||||||||| |||| |||||    
T  20661249 tgcaagagcatgagcaaccctgttaacttgtcacctaacaaactccaccctagag 20661195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 325
Target Start/End: Complemental strand, 11553300 - 11553195
Alignment:
Q  220 cgacatgaagaaatgataaaccaaaattcagaagtgtcgtcccgagtagcatgaaaggcatcagacgtcatcttggaatccatttgaaagacaacgttat 319  Q
    |||||||||||||| ||| | | ||| | ||||  |||||| ||||||||||||||||||||| | || | ||||||||| ||||  ||  ||||||| |    
T  11553300 cgacatgaagaaataatacagccaaacttagaatagtcgtctcgagtagcatgaaaggcatcacaagtaagcttggaatctatttcgaaatcaacgttgt 11553201  T
Q  320 caaatt 325  Q
    ||||||    
T  11553200 caaatt 11553195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 137 - 304
Target Start/End: Original strand, 23508933 - 23509100
Alignment:
Q  137 ctgcaagagcatgagaaaccctgttggtttgtcacctaacaaactacaccttagagttggtaaagaaagagctgaataaggaacgacatgaagaaatgat 236  Q
    |||||||| |||||| |||||  || | ||||| ||||||||||| |||| |||| |||||||||||||| || ||||  || |||||||| || || ||    
T  23508933 ctgcaagaacatgagcaaccccatttgcttgtcgcctaacaaactccaccctagaattggtaaagaaagaactaaatagagaccgacatgatgagataat 23509032  T
Q  237 aaaccaaaattcagaagtgtcgtcccgagtagcatgaaaggcatcagacgtcatcttggaatccattt 304  Q
      ||| ||||||||||||||| || ||| ||||||| ||||||||| |  | | ||||||||||||||    
T  23509033 gcacctaaattcagaagtgtcatctcgattagcatggaaggcatcacaattaagcttggaatccattt 23509100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 165 - 325
Target Start/End: Complemental strand, 16416630 - 16416470
Alignment:
Q  165 ttgtcacctaacaaactacaccttagagttggtaaagaaagagctgaataaggaacgacatgaagaaatgataaaccaaaattcagaagtgtcgtcccga 264  Q
    ||||| |||||||||||||||| |||||||||||||||||||  ||||||  || | |||||| || || ||  | | ||||||| | |||||||| |||    
T  16416630 ttgtcgcctaacaaactacaccctagagttggtaaagaaagaattgaatagagaccaacatgatgagataatgtatcgaaattcaaatgtgtcgtctcga 16416531  T
Q  265 gtagcatgaaaggcatcagacgtcatcttggaatccatttgaaagacaacgttatcaaatt 325  Q
     || |||| ||| ||||||| || | |||||||||| ||| |||  | ||||| |||||||    
T  16416530 ttaacatgcaagacatcagaagtaagcttggaatccgtttcaaaaccgacgttgtcaaatt 16416470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 138 - 205
Target Start/End: Complemental strand, 10910586 - 10910519
Alignment:
Q  138 tgcaagagcatgagaaaccctgttggtttgtcacctaacaaactacaccttagagttggtaaagaaag 205  Q
    |||||||||||||| |||| |||| ||||||||||||||||||| |||| || |||| | ||||||||    
T  10910586 tgcaagagcatgagcaaccgtgttagtttgtcacctaacaaactccaccctaaagttagaaaagaaag 10910519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 194
Target Start/End: Original strand, 1493313 - 1493382
Alignment:
Q  124 acgtggcctctttctgcaagagcatgagaaaccctgttggtttgtcacctaacaaactacaccttagagtt 194  Q
    ||||||||||| | |||||||||||||| ||||  ||||| ||||| ||||||||||| |||| |||||||    
T  1493313 acgtggcctctct-tgcaagagcatgagcaaccgcgttggcttgtcgcctaacaaactccaccctagagtt 1493382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 194
Target Start/End: Complemental strand, 9959283 - 9959227
Alignment:
Q  138 tgcaagagcatgagaaaccctgttggtttgtcacctaacaaactacaccttagagtt 194  Q
    |||||||||||||| ||||  ||||| ||||| ||||||||||| |||| |||||||    
T  9959283 tgcaagagcatgagcaaccgcgttggcttgtcgcctaacaaactccaccctagagtt 9959227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 194
Target Start/End: Complemental strand, 16890266 - 16890210
Alignment:
Q  138 tgcaagagcatgagaaaccctgttggtttgtcacctaacaaactacaccttagagtt 194  Q
    |||||||||||||| ||||  |||| |||||| ||||||||||| |||| |||||||    
T  16890266 tgcaagagcatgagcaaccgcgttgctttgtcgcctaacaaactccaccctagagtt 16890210  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 138 - 233
Target Start/End: Complemental strand, 14505777 - 14505682
Alignment:
Q  138 tgcaagagcatgagaaaccctgttggtttgtcacctaacaaactacaccttagagttggtaaagaaagagctgaataaggaacgacatgaagaaat 233  Q
    |||||||||||||| ||||  ||||| ||||| ||||||||||| |||| ||||||| | ||||||||  ||||| || |||||||| || |||||    
T  14505777 tgcaagagcatgagcaaccacgttggcttgtcgcctaacaaactccaccctagagttagaaaagaaagtactgaacaaagaacgacaggaggaaat 14505682  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 137 - 282
Target Start/End: Original strand, 2246804 - 2246949
Alignment:
Q  137 ctgcaagagcatgagaaaccctgttggtttgtcacctaacaaactacaccttagagttggtaaagaaagagctgaataaggaacgacatgaagaaatgat 236  Q
    |||||||| |||||| ||||  ||| | ||||  ||||||||||| |||| |||||||||||||||||||  | || |  || |||||||| || || ||    
T  2246804 ctgcaagaacatgagcaacctcgtttgcttgttgcctaacaaactccaccctagagttggtaaagaaagaattaaacagagaccgacatgatgagataat 2246903  T
Q  237 aaaccaaaattcagaagtgtcgtcccgagtagcatgaaaggcatca 282  Q
      ||| ||||||||||||||| || ||| |||||||  ||||||||    
T  2246904 gcacccaaattcagaagtgtcatctcgattagcatgggaggcatca 2246949  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 194
Target Start/End: Original strand, 14657790 - 14657846
Alignment:
Q  138 tgcaagagcatgagaaaccctgttggtttgtcacctaacaaactacaccttagagtt 194  Q
    ||||||||||||||| ||| |||||| ||||| ||||||||||| |||| |||||||    
T  14657790 tgcaagagcatgagataccttgttggcttgtcgcctaacaaactccaccctagagtt 14657846  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 204
Target Start/End: Original strand, 37590121 - 37590187
Alignment:
Q  138 tgcaagagcatgagaaaccctgttggtttgtcacctaacaaactacaccttagagttggtaaagaaa 204  Q
    |||||||||||||| ||||  ||||| ||||| ||||||||||| |||| ||||||| | |||||||    
T  37590121 tgcaagagcatgagcaaccacgttggcttgtcgcctaacaaactccaccctagagttagaaaagaaa 37590187  T

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Target: scaffold0011 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 206
Target Start/End: Original strand, 191088 - 191156
Alignment:
Q  138 tgcaagagcatgagaaaccctgttggtttgtcacctaacaaactacaccttagagttggtaaagaaaga 206  Q
    |||||| ||||||| ||||  ||||| ||||| ||||||||||| |||| ||||||| | |||||||||    
T  191088 tgcaagtgcatgagcaaccgcgttggcttgtcgcctaacaaactccaccctagagttagaaaagaaaga 191156  T

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