View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17569_low_12 (Length: 416)

Name: NF17569_low_12
Description: NF17569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17569_low_12
NF17569_low_12
[»] chr1 (1 HSPs)
chr1 (11-400)||(48478363-48478745)
[»] chr4 (3 HSPs)
chr4 (11-400)||(1556618-1556988)
chr4 (11-400)||(41286395-41286775)
chr4 (147-400)||(50544700-50544946)
[»] chr7 (6 HSPs)
chr7 (143-400)||(9966065-9966314)
chr7 (11-94)||(9965974-9966057)
chr7 (287-400)||(42277310-42277423)
chr7 (282-393)||(37301150-37301260)
chr7 (272-351)||(37300916-37300995)
chr7 (272-361)||(37301034-37301123)
[»] chr6 (2 HSPs)
chr6 (11-393)||(11347572-11347944)
chr6 (152-394)||(10414677-10414912)
[»] chr3 (1 HSPs)
chr3 (263-394)||(35415576-35415707)
[»] chr2 (3 HSPs)
chr2 (259-400)||(33979197-33979338)
chr2 (11-101)||(33978991-33979081)
chr2 (131-207)||(33979094-33979170)
[»] chr5 (1 HSPs)
chr5 (11-120)||(36343582-36343690)


Alignment Details
Target: chr1 (Bit Score: 164; Significance: 2e-87; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 11 - 400
Target Start/End: Original strand, 48478363 - 48478745
Alignment:
Q  11 cataggatcctaggtgacaaccaattgaagaagtacgacgtgcttagatatattcatactttgcatgaggatatagatcattatttgcttggcaaaggaa 110  Q
    ||||||||||||||||||||||||| ||||||||| || |||||||| || ||||||||||||||||||||||||||||||||| | || || |||||||    
T  48478363 cataggatcctaggtgacaaccaatggaagaagtatgatgtgcttaggtacattcatactttgcatgaggatatagatcattatctcctggggaaaggaa 48478462  T
Q  111 caaatgcaaagattataaatgaggtgtgatgtgaacctccacaaccaggtcttgtgaatttgaatgttgatggaagtagcaactctcgtgaagggatgag 210  Q
    || |||||||||||| ||| |||||| |||| |||||| ||||||||||||||||||| |||||||| ||||||||| ||||||||| ||       |||    
T  48478463 catatgcaaagattagaaaagaggtgcgatgggaaccttcacaaccaggtcttgtgaaattgaatgtggatggaagttgcaactctcatg-------gag 48478555  T
Q  211 gaatcagtgctagtgatcttatttgggatgataaaggcatttaacttattgggttcttcttcaatgatgggcaagatgatgtgttatttactgagctttt 310  Q
    | ||  ||||| |||||||||||  ||| ||||||||   ||  |||  ||| |||| || ||||||||| |||| ||||||||||||| |  |||||||    
T  48478556 ggattggtgctggtgatcttattcaggacgataaaggtgattggcttgctggcttctcctccaatgatggtcaaggtgatgtgttatttgcatagctttt 48478655  T
Q  311 taaactttatcatggtatcactcttttgcttcagcatgggcattcaagagcaatcataggatcagatagcttagaggctattcatttgtt 400  Q
    |  | |||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||||| |||||||| |||| |||||    
T  48478656 tgcaatttatcatggtatcactcttttgcttcaacacgggcattcaagagcaatcatagaatcagatagcctagaggctcttcagttgtt 48478745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 147; Significance: 2e-77; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 11 - 400
Target Start/End: Complemental strand, 1556988 - 1556618
Alignment:
Q  11 cataggatcctaggtgacaaccaattgaagaagtacgacgtgcttagatatattcatactttgcatgaggatatagatcattatttgcttggcaaaggaa 110  Q
    ||||||||||||||||||||||||| ||||||||| || |||||||| || ||||||||||||||||||||||||||||||||| | ||||| |||||||    
T  1556988 cataggatcctaggtgacaaccaatggaagaagtatgatgtgcttaggtacattcatactttgcatgaggatatagatcattatctccttggaaaaggaa 1556889  T
Q  111 caaatgcaaagattataaatgaggtgtgatgtgaacctccacaaccaggtcttgtgaatttgaatgttgatggaagtagcaactctcgtgaagggatgag 210  Q
    || ||||||| |||| ||| |||||| |||| |||||||||||||||||||||||||| |||||||| ||||||||| |||||||| |||       |||    
T  1556888 catatgcaaatattagaaaagaggtgagatgggaacctccacaaccaggtcttgtgaaattgaatgtggatggaagttgcaactctggtg-------gag 1556796  T
Q  211 gaatcagtgctagtgatcttatttgggatgataaaggcatttaacttattgggttcttcttcaatgatgggcaagatgatgtgttatttactgagctttt 310  Q
    | ||  ||||| ||| |||||||||||| ||||||||   ||  ||| ||||||||| || ||||||||| |||| ||||||||||||| |             
T  1556795 ggattggtgctggtggtcttatttgggacgataaaggtgattggcttgttgggttctcctccaatgatggtcaaggtgatgtgttatttgc--------- 1556705  T
Q  311 taaactttatcatggtatcactcttttgcttcagcatgggcattcaagagcaatcataggatcagatagcttagaggctattcatttgtt 400  Q
       | ||||||| ||||||||| |||||||||| || |||||||||||||||||||||| |||||||||| |||||||| |||| |||||    
T  1556704 ---aatttatcacggtatcacttttttgcttcaacacgggcattcaagagcaatcatagaatcagatagcctagaggctcttcagttgtt 1556618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 11 - 400
Target Start/End: Complemental strand, 41286775 - 41286395
Alignment:
Q  11 cataggatcctaggtgacaaccaattgaagaagtacgacgtgcttagatatattcatactttgcatgaggatatagatcattatttgcttggcaaaggaa 110  Q
    |||||||||||||||| |||||| | |||||| || |||||||||||||| ||||||||||||||||| |||||| |||||||| ||||||| |||||||    
T  41286775 cataggatcctaggtggcaaccagtggaagaattatgacgtgcttagatacattcatactttgcatgatgatatatatcattatctgcttggaaaaggaa 41286676  T
Q  111 caaatgcaaagattataaatgaggtgtgatgtgaacctccacaaccaggtc-ttgtgaatttgaatgttgatggaagtagcaactctcgtgaagggatga 209  Q
    |||||||||| |||| ||||||||| ||||| ||||||||||||||||||| ||||||| ||||||||   ||||||| | ||||||| || ||||||      
T  41286675 caaatgcaaatattagaaatgaggtatgatgggaacctccacaaccaggtctttgtgaaattgaatgt---tggaagttgtaactctcatggagggattg 41286579  T
Q  210 ggaatcagtgctagtgatcttatttgggatgataaaggcatttaacttattgggttcttcttcaatgatgggcaagatgatgtgttatttactgagcttt 309  Q
    |  |    || |||   ||||||| | || |||||||| | ||  ||| ||||||||| |||||||||||||||||  ||||||||||||  |||||| |    
T  41286578 gtga----tgatag---tcttattcgagacgataaaggtaattggcttgttgggttctccttcaatgatgggcaaggcgatgtgttatttgttgagctct 41286486  T
Q  310 ttaaactttatcatggtatcactcttttgcttcagcatgggcattcaagagcaatcataggatcagatagcttagaggctattcatttgtt 400  Q
    ||  | |||||||| ||||||||||| |||||||||||||||||||||||||||| |||| |||| ||||| ||||||||||||| |||||    
T  41286485 ttgcaatttatcattgtatcactcttctgcttcagcatgggcattcaagagcaattatagaatcatatagcctagaggctattcagttgtt 41286395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 147 - 400
Target Start/End: Complemental strand, 50544946 - 50544700
Alignment:
Q  147 ctccacaaccaggtcttgtgaatttgaatgttgatggaagtagcaactctcgtgaagggatgaggaatcagtgctagtgatcttatttgggatgataaag 246  Q
    |||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||  |       |||| |||  |||||| |||| |||||||    
T  50544946 ctccacaaccaggtcttgtgaaattgaatgttgatggaagttgcaactctcgtggagggattgg-------tgctcgtgggcttattcgggacgataaag 50544854  T
Q  247 gcatttaacttattgggttcttcttcaatgatgggcaagatgatgtgttatttactgagctttttaaactttatcatggtatcactcttttgcttcagca 346  Q
    | | ||  |||  |||||||| || ||||||||| |||| |||||||||| || |||||||||||  | |||||||||||||||||||| ||||||| ||    
T  50544853 gtaattggcttgctgggttctcctccaatgatggtcaaggtgatgtgttaattgctgagctttttgcaatttatcatggtatcactcttctgcttcaaca 50544754  T
Q  347 tgggcattcaagagcaatcataggatcagatagcttagaggctattcatttgtt 400  Q
    |||| |||||| ||||||||||| |||||||||| ||||||||||||| |||||    
T  50544753 tgggtattcaaaagcaatcatagaatcagatagcctagaggctattcagttgtt 50544700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 88; Significance: 4e-42; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 143 - 400
Target Start/End: Original strand, 9966065 - 9966314
Alignment:
Q  143 gaacctccacaaccaggtcttgtgaatttgaatgttgatggaagtagcaactctcgtgaagggatgaggaatcagtgctagtgatcttatttgggatgat 242  Q
    ||||||||| |||||||||||||||| ||||||||||||||||||  ||||||||||| | ||||    |       || ||| ||||||| |||| |||    
T  9966065 gaacctccataaccaggtcttgtgaaattgaatgttgatggaagttacaactctcgtggaaggattgtta-------ctggtgttcttattcgggacgat 9966157  T
Q  243 aaaggcatttaacttattgggttcttcttcaatgatgggcaagatgatgtgttatttactgagctttttaaactttatcatggtatcactcttttgcttc 342  Q
    ||||||| ||  ||| |||||| || || |||||||||||||| ||||||||| ||| |||| | ||||  | |||||||||||||||||||| ||| ||    
T  9966158 aaaggcaattggcttgttgggt-ctcctccaatgatgggcaaggtgatgtgttctttgctgatcatttttcaatttatcatggtatcactcttctgcatc 9966256  T
Q  343 agcatgggcattcaagagcaatcataggatcagatagcttagaggctattcatttgtt 400  Q
    ||||||||||||||||||||||||||| |||||||| | ||||||||||||| |||||    
T  9966257 agcatgggcattcaagagcaatcatagaatcagataacctagaggctattcagttgtt 9966314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 11 - 94
Target Start/End: Original strand, 9965974 - 9966057
Alignment:
Q  11 cataggatcctaggtgacaaccaattgaagaagtacgacgtgcttagatatattcatactttgcatgaggatatagatcattat 94  Q
    ||||||||||||||||||||||||| ||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||    
T  9965974 cataggatcctaggtgacaaccaatggaagaagtatgatgtgcttagatacattcatactttgcatgaggatatagatcattat 9966057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 287 - 400
Target Start/End: Original strand, 42277310 - 42277423
Alignment:
Q  287 tgatgtgttatttactgagctttttaaactttatcatggtatcactcttttgcttcagcatgggcattcaagagcaatcataggatcagatagcttagag 386  Q
    |||| ||||||||  |||||||||| || ||||||||||||||||| || || ||||| |||||||||||||||||||||||| |||||| ||| |||||    
T  42277310 tgatatgttatttgatgagctttttgaaatttatcatggtatcactgttgtgtttcagtatgggcattcaagagcaatcatagaatcagagagcctagag 42277409  T
Q  387 gctattcatttgtt 400  Q
    |||||||| |||||    
T  42277410 gctattcagttgtt 42277423  T

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Target: chr7; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 282 - 393
Target Start/End: Original strand, 37301150 - 37301260
Alignment:
Q  282 caagatgatgtgttatttactgagctttttaaactttatcatggtatcactcttttgcttcagcatgggcattcaagagcaatcataggatcagatagct 381  Q
    |||| ||||||| ||||| |||||||||||| | | |||||||| ||| ||||| |||| || ||||||| |||| |||||||||| | |||||||||||    
T  37301150 caaggtgatgtgctatttgctgagctttttacaatctatcatggcatcgctcttctgctccaacatgggccttcaggagcaatcat-gaatcagatagct 37301248  T
Q  382 tagaggctattc 393  Q
    | ||||||||||    
T  37301249 ttgaggctattc 37301260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 272 - 351
Target Start/End: Original strand, 37300916 - 37300995
Alignment:
Q  272 caatgatgggcaagatgatgtgttatttactgagctttttaaactttatcatggtatcactcttttgcttcagcatgggc 351  Q
    ||||||||| |||| ||||||| ||||| |||||||||||| | | |||||||||||| ||||| |||| || |||||||    
T  37300916 caatgatggtcaaggtgatgtgctatttgctgagctttttacaatctatcatggtatcgctcttctgctccaacatgggc 37300995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 361
Target Start/End: Original strand, 37301034 - 37301123
Alignment:
Q  272 caatgatgggcaagatgatgtgttatttactgagctttttaaactttatcatggtatcactcttttgcttcagcatgggcattcaagagc 361  Q
    ||||||||| |||| ||||||| ||||| |||||||||||| | | ||||||| |||  ||||| |||| || ||||||| |||| ||||    
T  37301034 caatgatggtcaaggtgatgtgctatttgctgagctttttacaatctatcatgatattgctcttctgctccaacatgggccttcaggagc 37301123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 11 - 393
Target Start/End: Complemental strand, 11347944 - 11347572
Alignment:
Q  11 cataggatcctaggtgacaaccaattgaagaagtacgacgtgcttagatatattcatactttgcatgaggatatagatcattatttgcttggcaaaggaa 110  Q
    ||||| ||||||||||||||||||| |||||||||  |  | |||||||| |||||||| |||||| || ||||||||||| || |||||| ||||||||    
T  11347944 catagaatcctaggtgacaaccaatggaagaagtataatatacttagatacattcatacattgcattagaatatagatcatcatctgcttgacaaaggaa 11347845  T
Q  111 caaatgcaaagattataaatgaggtgtgatgtgaacctccacaaccaggtcttgtgaatttgaatgttgatggaagtagcaactctcgtgaagggatgag 210  Q
    |||||   ||||||| ||| |||||| ||||   ||||||||||| |||||||||||| | |||||||||||||||| ||||||     ||||    |||    
T  11347844 caaataataagattagaaaggaggtgcgatggccacctccacaacaaggtcttgtgaaatcgaatgttgatggaagttgcaact---tagaag----gag 11347752  T
Q  211 gaatcagtgctagtgatcttatttgggatgataaaggcatttaacttattgggttcttcttcaatgatgggcaagatgatgtgttatttactgagctttt 310  Q
      ||  ||    ||| ||||||||||||||| ||||| |  |  |||||||| || |||| |||||||||    | ||||||| ||||| ||||| ||||    
T  11347751 tgattggtagaggtggtcttatttgggatgagaaaggtacctggcttattggttttttctccaatgatgg---tggtgatgtgctatttgctgaggtttt 11347655  T
Q  311 taaactttatcatggtatcactcttttgcttcagcatgggcattcaagagcaatcataggatcagatagcttagaggctattc 393  Q
    |  | |||||||||||||||||||| | ||||| ||||  |||||||||||||| |||| |||||||||| | ||||||||||    
T  11347654 tgcaatttatcatggtatcactcttctacttcaacatgaacattcaagagcaattatagaatcagatagccttgaggctattc 11347572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 152 - 394
Target Start/End: Original strand, 10414677 - 10414912
Alignment:
Q  152 caaccaggtcttgtgaatttgaatgttgatggaagtagcaactctcgtgaagggatgaggaatcagtgctagtgatcttatttgggatgataaaggcatt 251  Q
    |||||| |||||||||| |||||||||||||||||| |||||||||||| |||||| ||       |||| |||  |||||| |||| | |||||| |      
T  10414677 caaccatgtcttgtgaaattgaatgttgatggaagttgcaactctcgtggagggattag-------tgctggtgggcttattcgggacggtaaaggtaac 10414769  T
Q  252 taacttattgggttcttcttcaatgatgggcaagatgatgtgttatttactgagctttttaaactttatcatggtatcactcttttgcttcagcatgggc 351  Q
    |  |||  ||| |||| || ||||||||| |||| ||||||||||  | |||||||||||  | ||||||||||||||||||||  |||||| ||||||     
T  10414770 tggcttgctggattctcctccaatgatggtcaaggtgatgtgttaactcctgagctttttgtaatttatcatggtatcactcttcagcttcaacatgggt 10414869  T
Q  352 attcaagagcaatcataggatcagatagcttagaggctattca 394  Q
    |||||| ||||| ||||| |||||||||| |||||||||||||    
T  10414870 attcaaaagcaaacatagaatcagatagcctagaggctattca 10414912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 263 - 394
Target Start/End: Original strand, 35415576 - 35415707
Alignment:
Q  263 gttcttcttcaatgatgggcaagatgatgtgttatttactgagctttttaaactttatcatggtatcactcttttgcttcagcatgggcattcaagagca 362  Q
    ||||| || |||||||||  ||| ||| ||||||||| ||||||||||   | |||||||||||||||||||||||||||| ||||||||||||||||||    
T  35415576 gttctcctccaatgatggttaaggtgacgtgttatttgctgagcttttagcaatttatcatggtatcactcttttgcttcaacatgggcattcaagagca 35415675  T
Q  363 atcataggatcagatagcttagaggctattca 394  Q
    ||||||| || |||||| ||||||||||||||    
T  35415676 atcatagaattagatagtttagaggctattca 35415707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 5e-29; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 259 - 400
Target Start/End: Original strand, 33979197 - 33979338
Alignment:
Q  259 ttgggttcttcttcaatgatgggcaagatgatgtgttatttactgagctttttaaactttatcatggtatcactcttttgcttcagcatgggcattcaag 358  Q
    ||||||||| || |||||||||  ||| |||||||  |||| || ||||||||  | |||||||||||||||||||| ||||||| ||||||||||||||    
T  33979197 ttgggttctcctccaatgatggttaaggtgatgtgcaatttgctaagctttttgcaatttatcatggtatcactcttctgcttcaacatgggcattcaag 33979296  T
Q  359 agcaatcataggatcagatagcttagaggctattcatttgtt 400  Q
    ||||||||||| |||| ||||| | ||||||||||| |||||    
T  33979297 agcaatcatagaatcatatagccttgaggctattcagttgtt 33979338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 11 - 101
Target Start/End: Original strand, 33978991 - 33979081
Alignment:
Q  11 cataggatcctaggtgacaaccaattgaagaagtacgacgtgcttagatatattcatactttgcatgaggatatagatcattatttgcttg 101  Q
    |||||||||||| ||||||  |||| |||||| || || ||||||||||| ||||||||||| ||||||||||||||||||||| ||||||    
T  33978991 cataggatcctaagtgacattcaatggaagaaatatgatgtgcttagatacattcatacttttcatgaggatatagatcattatctgcttg 33979081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 131 - 207
Target Start/End: Original strand, 33979094 - 33979170
Alignment:
Q  131 gaggtgtgatgtgaacctccacaaccaggtcttgtgaatttgaatgttgatggaagtagcaactctcgtgaagggat 207  Q
    |||||| ||||  |||||||||||| ||||||||| || |||||||||||||||||| |||||||| ||| ||||||    
T  33979094 gaggtgcgatgacaacctccacaactaggtcttgtaaaattgaatgttgatggaagttgcaactcttgtggagggat 33979170  T

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Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 11 - 120
Target Start/End: Complemental strand, 36343690 - 36343582
Alignment:
Q  11 cataggatcctaggtgacaaccaattgaagaagtacgacgtgcttagatatattcatactttgcatgaggatatagatcattatttgcttggcaaaggaa 110  Q
    |||||||||||||||||||| |||| ||||||||| || |||||| | || |||||||| |||| |||||||||| |||||||| |||||||||||||||    
T  36343690 cataggatcctaggtgacaatcaat-gaagaagtatgatgtgctttggtacattcatacgttgcgtgaggatataaatcattatctgcttggcaaaggaa 36343592  T
Q  111 caaatgcaaa 120  Q
    ||||||||||    
T  36343591 caaatgcaaa 36343582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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