View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17569_low_16 (Length: 383)
Name: NF17569_low_16
Description: NF17569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17569_low_16 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 9 - 383
Target Start/End: Original strand, 8797338 - 8797716
Alignment:
| Q |
9 |
gagatgaagtgactaaaggcatcatcatcattggaggacatagcccaccactgttttctccaaaagcacccatcacataagaacaacttccattagaact |
108 |
Q |
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| T |
8797338 |
gagatgaagtgactaaaggcatcatcatcattggaggacatagcccaccactgttttctccaaaagcacccatcacataagaacaacttccattagaact |
8797437 |
T |
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| Q |
109 |
accctccattgaattaatactcactcact--------tagccacaataacacttcctttttattaccctttttgccttctaggtcagatttttctttctc |
200 |
Q |
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| T |
8797438 |
accctccattgaattaatactcactcactcactcacttagccacaataacacttcctttttattaccctttttgccttctaggtcagatttttctttctc |
8797537 |
T |
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| Q |
201 |
tcacttgaatgaatgatattaatattgaagatgtttttgtttcacacaagggtcacccgcccgggttttatggtaaaaaagtaacaggcttttttacaga |
300 |
Q |
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| T |
8797538 |
tcacttgaa----tgatattaatattgaagatgtttttgtttcacacaagggtcacccgcccgggttttatggtaaaaaagtaacaggcttttttacaga |
8797633 |
T |
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| Q |
301 |
aaaacataaatagtgatagtgttttgtggtggctatgttgtatagttacagtcagttacatgaagaagtagtgaagaggtttt |
383 |
Q |
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| T |
8797634 |
aaaacataaatagtgatagtgttttgtggtggctatgttgtatagttacagtcagttacatgaagaagtagtgaagaggtttt |
8797716 |
T |
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