View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17569_low_18 (Length: 375)
Name: NF17569_low_18
Description: NF17569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17569_low_18 |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 84; Significance: 8e-40; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 216 - 351
Target Start/End: Complemental strand, 11119626 - 11119486
Alignment:
| Q |
216 |
aagttactatgtgaaaaatcaatgaa-ttacttctaacaaaggaaaagacaatgttatatctatacttcaaattggttttaattt----agatatagaga |
310 |
Q |
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||||||||||||||||||||||| || ||| ||||||||||| |||||||||| |||||||||||||||||| |||||||||||| |||| |||||| |
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| T |
11119626 |
aagttactatgtgaaaaatcaataaaattatttctaacaaagcaaaagacaatcttatatctatacttcaaaatggttttaattttttaagatgtagaga |
11119527 |
T |
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| Q |
311 |
ccttagataattggttgaagaaggttcataaggaccttcaa |
351 |
Q |
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| T |
11119526 |
ccttagataattggttgaagcaggtccataaggaccttcaa |
11119486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 220 - 351
Target Start/End: Complemental strand, 11106472 - 11106336
Alignment:
| Q |
220 |
tactatgtgaaaaatcaatgaa-ttacttctaacaaaggaaaagacaatgttatatctatacttcaaattggttttaattt----agatatagagacctt |
314 |
Q |
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|||| ||||||||||||||||| ||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
11106472 |
tactgtgtgaaaaatcaatgaaattatttctaacaaagcaaaagacattgttatatctatacttcaaattggttttaattttttaagatgtagagacctt |
11106373 |
T |
|
| Q |
315 |
agataattggttgaagaaggttcataaggaccttcaa |
351 |
Q |
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| T |
11106372 |
agataattggtagaagcaggtccataaggaccttcaa |
11106336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 217 - 351
Target Start/End: Complemental strand, 11592697 - 11592558
Alignment:
| Q |
217 |
agttactatgtgaaaaatcaatgaa-ttacttctaacaaaggaaaagacaatgttatatctatacttcaaattggttttaattt----agatatagagac |
311 |
Q |
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| T |
11592697 |
agttactatgtgaaacatcaatgaaattatttctaacaaagcataagacaatcttatatatatacttcaaattggttttaattttttaagatgtagagac |
11592598 |
T |
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| Q |
312 |
cttagataattggttgaagaaggttcataaggaccttcaa |
351 |
Q |
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| T |
11592597 |
cttagataattggttgaagcaggtccataaggaccttcaa |
11592558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 21241777 - 21241710
Alignment:
| Q |
20 |
tctgtcaaagacaatgcttctgatattcatgaagtggatccaatcaaaatatggatcaacaaaaaact |
87 |
Q |
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| T |
21241777 |
tctgtcaaagagaatgcttctgatattcatgaagtgtatccaattaaaatatggatcaagaaaaaact |
21241710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 21286931 - 21286997
Alignment:
| Q |
20 |
tctgtcaaagacaatgcttctgatattcatgaagtggatccaatcaaaatatggatcaacaaaaaac |
86 |
Q |
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| T |
21286931 |
tctgtcatagagaatgcttctgatattcatgaagtggatccaattaaattatggatcaagaaaaaac |
21286997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 146 - 194
Target Start/End: Original strand, 33726665 - 33726713
Alignment:
| Q |
146 |
gaggtaaaacttattatggaaaaatttattcattattacttaacataac |
194 |
Q |
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| T |
33726665 |
gaggtaaaacttattatggagaaatttattcatcattacttaatataac |
33726713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 53
Target Start/End: Original strand, 21150660 - 21150692
Alignment:
| Q |
21 |
ctgtcaaagacaatgcttctgatattcatgaag |
53 |
Q |
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| T |
21150660 |
ctgtcaaagagaatgcttctgatattcatgaag |
21150692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 140 - 180
Target Start/End: Complemental strand, 37397 - 37357
Alignment:
| Q |
140 |
ttttaggaggtaaaacttattatggaaaaatttattcatta |
180 |
Q |
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| T |
37397 |
ttttaggaggtaaaacttattatggagaaatttattcatta |
37357 |
T |
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