View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17569_low_20 (Length: 373)
Name: NF17569_low_20
Description: NF17569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17569_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 182 - 360
Target Start/End: Complemental strand, 4233675 - 4233490
Alignment:
| Q |
182 |
ttcaaatatgcatatatacctgtcgaggatcttttatttcttcgaaatcttgttcatcatcatcggtatcgggtatactttcaccggacctgatatcctc |
281 |
Q |
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| T |
4233675 |
ttcaaatatgcatatatacctgtcgaggatcttttatttcttcaaaatcttgttcatcatcatcggtatcgggtataatttcaccggacctgatatcctc |
4233576 |
T |
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| Q |
282 |
ctcgtgcattaccttagcgtaagattctctggttggttttctttagctcttca-------cctccgtaaccaccccgtcctccctg |
360 |
Q |
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| T |
4233575 |
ctcgtgcattaccttagcgtaagattctctggttggttttctttagctcttcacgatcctcctccgtaaccaccccgtcctccctg |
4233490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 16 - 141
Target Start/End: Complemental strand, 1715005 - 1714880
Alignment:
| Q |
16 |
actagaactattgtattcgtttttacttgtatatttatggtatgttctcaatattttagaatataccacaagtttaactaatattgttccggttgtagtt |
115 |
Q |
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| T |
1715005 |
actagaactattgtattcgtgtttacttgtatatttatggcatgttctcaatattttagaatataccacaagtttaactaatattgttccggttgtagtt |
1714906 |
T |
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| Q |
116 |
aaattattattttttgttcaaattgg |
141 |
Q |
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| T |
1714905 |
aaattattattttttggtcaaattgg |
1714880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 189 - 289
Target Start/End: Original strand, 36514220 - 36514320
Alignment:
| Q |
189 |
atgcatatatacctgtcgaggatcttttatttcttcgaaatcttgttcatcatcatcggtatcgggtatactttcaccggacctgatatcctcctcgtgc |
288 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |
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| T |
36514220 |
atgcatatatacctgtcgaggatcttttatttcttgaaaatcttgttcatcatcatcggaatcgggtatactttcattggacctgatatcctcctcgtgc |
36514319 |
T |
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| Q |
289 |
a |
289 |
Q |
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| T |
36514320 |
a |
36514320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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