View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17569_low_23 (Length: 345)
Name: NF17569_low_23
Description: NF17569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17569_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 163; Significance: 5e-87; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 15 - 189
Target Start/End: Complemental strand, 12651376 - 12651202
Alignment:
| Q |
15 |
ttaagagacaatttggagagtatagagaaagcaatgtcatcgtgtatatgcgagggagtactaaccttggttttataagttgcagaagccatggattgag |
114 |
Q |
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| T |
12651376 |
ttaagaggcaatttggagagtatagagaaagcaacgtcatcgtgtatatgcgagggagtactaacctcggttttataagttgcagaagccatggattgag |
12651277 |
T |
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| Q |
115 |
atgcaacagagaaaagcactgaagtgagatatattgctctgcttgttgggttgagtcaaaattgcaaactgttga |
189 |
Q |
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| T |
12651276 |
atgcaacagagaaaagcactgaagtgagatatattgctctgcttgttgggttgagtcaaaattgcaaactgttga |
12651202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 226 - 341
Target Start/End: Complemental strand, 12651165 - 12651050
Alignment:
| Q |
226 |
ctctgacaaaatgaatcagcttttattaccaattaattgcttttattctggtacaaagtcaacatctactccattaaagcctatttttcatattttaatt |
325 |
Q |
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| T |
12651165 |
ctctgacaaaatgaatcagcttttattaccaattaattgcttttattctggtacaaagtcaacatctactccattaaagcctatttttcatattttaatt |
12651066 |
T |
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| Q |
326 |
cttcccatgattctct |
341 |
Q |
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| T |
12651065 |
tttcccatgattctct |
12651050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 15 - 183
Target Start/End: Complemental strand, 12646244 - 12646075
Alignment:
| Q |
15 |
ttaagagacaatttggagagtatagagaaagcaatgtcatcgtgtatatgcgagggagtactaaccttggttttataagttgcagaagccatggattgag |
114 |
Q |
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| T |
12646244 |
ttaagaggcaatttggagagtattgagagagcaatgtcatcgtgtatatgcgagggagtactaaccttcttcttatcggttgcatcagccatggattgaa |
12646145 |
T |
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| Q |
115 |
a-tgcaacagagaaaagcactgaagtgagatatattgctctgcttgttgggttgagtcaaaattgcaaac |
183 |
Q |
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| T |
12646144 |
actgacactgagaaaagcacagaagtgagatatattacactgcttgttgggttgagtcaaagttgcaaac |
12646075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 61
Target Start/End: Complemental strand, 12721504 - 12721466
Alignment:
| Q |
23 |
caatttggagagtatagagaaagcaatgtcatcgtgtat |
61 |
Q |
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| T |
12721504 |
caatttggagagaatagagaaagcaatgtcgtcgtgtat |
12721466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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