View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17569_low_26 (Length: 339)

Name: NF17569_low_26
Description: NF17569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17569_low_26
NF17569_low_26
[»] chr2 (5 HSPs)
chr2 (19-339)||(30731704-30732024)
chr2 (145-304)||(30733808-30733970)
chr2 (242-339)||(32918001-32918096)
chr2 (291-339)||(8973280-8973328)
chr2 (291-339)||(9023415-9023463)
[»] chr1 (22 HSPs)
chr1 (19-339)||(14669800-14670120)
chr1 (101-339)||(14654431-14654670)
chr1 (101-339)||(14664222-14664461)
chr1 (152-339)||(14708407-14708594)
chr1 (187-339)||(14705952-14706104)
chr1 (144-339)||(14716113-14716307)
chr1 (145-339)||(14674295-14674497)
chr1 (145-339)||(14679673-14679875)
chr1 (211-339)||(14676520-14676648)
chr1 (211-339)||(14683638-14683766)
chr1 (96-191)||(14676438-14676533)
chr1 (96-191)||(14683556-14683651)
chr1 (228-339)||(14681505-14681615)
chr1 (217-339)||(14652419-14652541)
chr1 (217-339)||(14662210-14662332)
chr1 (19-71)||(14676334-14676386)
chr1 (19-71)||(14683452-14683504)
chr1 (248-339)||(14667202-14667292)
chr1 (145-193)||(14667350-14667398)
chr1 (145-193)||(14681419-14681467)
chr1 (291-339)||(28366290-28366338)
chr1 (291-339)||(33988038-33988086)
[»] chr8 (5 HSPs)
chr8 (247-301)||(10944527-10944581)
chr8 (290-339)||(41841243-41841292)
chr8 (147-223)||(10944616-10944688)
chr8 (290-339)||(44878950-44878999)
chr8 (290-339)||(44880922-44880971)
[»] chr6 (1 HSPs)
chr6 (289-339)||(10795981-10796031)
[»] chr4 (2 HSPs)
chr4 (289-339)||(50077290-50077340)
chr4 (190-223)||(23267684-23267717)


Alignment Details
Target: chr2 (Bit Score: 309; Significance: 1e-174; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 19 - 339
Target Start/End: Original strand, 30731704 - 30732024
Alignment:
Q  19 aagaacttcaagatgcttaagctggcctaatgaaagttactgaacaaattaaggattggtgtgtagttttacttatgctttaatgaccactaccattacc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  30731704 aagaacttcaagatgcttaagctggcctaatgaaagttactgaacaaattaaggattggtgtgtagttttacttatgctttaatgaccattaccattacc 30731803  T
Q  119 attgattgtttctagctgatgcaagttctaatggatgaattggtgaaatgctttagtgggctctatgttggcataacctctgcttggtaattgctctttg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30731804 attgattgtttctagctgatgcaagttctaatggatgaattggtgaaatgctttagtgggctctatgttggcataacctctgcttggtaattgctctttg 30731903  T
Q  219 ttggcaacgcatgtgtacaatgagaaatagtcccacatcgagtagtcaagaaagcaactgagaacatgtctgatataaaagcagcaacgagcccatcttt 318  Q
    |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30731904 ttggcaacacatgcgtacaatgagaaatagtcccacatcgagtagtcaagaaagcaactgagaacatgtctgatataaaagcagcaacgagcccatcttt 30732003  T
Q  319 caactcatacctttctcggcc 339  Q
    |||||||||||||||||||||    
T  30732004 caactcatacctttctcggcc 30732024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 145 - 304
Target Start/End: Original strand, 30733808 - 30733970
Alignment:
Q  145 tctaatggatgaattggtgaaatgctttagtgggctctatgttggcataacctctgcttggtaattgctctttgttggc------aacgcatgtgtacaa 238  Q
    |||||||||||||||| ||||| | ||||||| ||||||||||||||||      |||||||| |||||||||| |||       |||| |||  |||||    
T  30733808 tctaatggatgaattgctgaaaggatttagtgtgctctatgttggcatata----gcttggtagttgctctttggtgggctttgtaacgtatgcatacaa 30733903  T
Q  239 tgagaaata-gtcccacatcgagtagtcaagaaagcaactgagaacatgtctgatataaaagcagca 304  Q
    ||| ||| | ||||||||||||| |||||||||| ||| |||||||||||| |||||||||||||||    
T  30733904 tgataaaaatgtcccacatcgaggagtcaagaaaacaagtgagaacatgtcagatataaaagcagca 30733970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 339
Target Start/End: Original strand, 32918001 - 32918096
Alignment:
Q  242 gaaatagtcccacatcgagtagtcaagaaagcaactgagaacatgtctgatataaaagcagcaacgagcccatctttcaactcatacctttctcggcc 339  Q
    ||||||||||||||||||| | |||||||||||||  |||| ||| | ||||||||||||||| | || | | | |||||||||||||||||||||||    
T  32918001 gaaatagtcccacatcgaggaatcaagaaagcaacatagaaaatg-cagatataaaagcagcagctagtcta-cattcaactcatacctttctcggcc 32918096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 339
Target Start/End: Original strand, 8973280 - 8973328
Alignment:
Q  291 atataaaagcagcaacgagcccatctttcaactcatacctttctcggcc 339  Q
    |||||||||||  | ||||  ||||||||||||||||||||||||||||    
T  8973280 atataaaagcataagcgagttcatctttcaactcatacctttctcggcc 8973328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 339
Target Start/End: Original strand, 9023415 - 9023463
Alignment:
Q  291 atataaaagcagcaacgagcccatctttcaactcatacctttctcggcc 339  Q
    |||||||||||  | |||| ||| |||||||||||||||||||||||||    
T  9023415 atataaaagcataagcgagtccaactttcaactcatacctttctcggcc 9023463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 19 - 339
Target Start/End: Complemental strand, 14670120 - 14669800
Alignment:
Q  19 aagaacttcaagatgcttaagctggcctaatgaaagttactgaacaaattaaggattggtgtgtagttttacttatgctttaatgaccactaccattacc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  14670120 aagaacttcaagatgcttaagctggcctaatgaaagttactgaacaaattaaggattggtgtgtagttttacttatgctttaatgaccattaccattacc 14670021  T
Q  119 attgattgtttctagctgatgcaagttctaatggatgaattggtgaaatgctttagtgggctctatgttggcataacctctgcttggtaattgctctttg 218  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  14670020 attgattgtttctaggtgatgcaagttctaatggatgaattggtgaaatgctttagtgggctgtatgttggcataacctctgcttggtaattgctctttg 14669921  T
Q  219 ttggcaacgcatgtgtacaatgagaaatagtcccacatcgagtagtcaagaaagcaactgagaacatgtctgatataaaagcagcaacgagcccatcttt 318  Q
    |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14669920 ttggcaacacatgcgtacaatgagaaatagtcccacatcgagtagtcaagaaagcaactgagaacatgtctgatataaaagcagcaacgagcccatcttt 14669821  T
Q  319 caactcatacctttctcggcc 339  Q
    |||||||||||||||||||||    
T  14669820 caactcatacctttctcggcc 14669800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 101 - 339
Target Start/End: Complemental strand, 14654670 - 14654431
Alignment:
Q  101 atgaccactaccattaccattgattgtttctagctgatgcaagttctaatggatgaattggtgaaatgctttagtgggctctatgttggca-taacctct 199  Q
    |||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||| || |||||    
T  14654670 atgaccactaccattatcattgattgtttctagctgatgcatgttgtaatggatgaattggtgaaatgctttagtggcctctatgttggcaatatcctct 14654571  T
Q  200 gcttggtaattgctctttgttggcaacgcatgtgtacaatgagaaatagtcccacatcgagtagtcaagaaagcaactgagaacatgtctgatataaaag 299  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||    
T  14654570 gcttggtaattgctctttgttggcaacacatgcgtacaatgagaaatagtcccacatcgagcagtcaagaaagcaactgagaaaatgtctaatataaaag 14654471  T
Q  300 cagcaacgagcccatctttcaactcatacctttctcggcc 339  Q
    ||||| |  | |||||||||||||||||||||||||||||    
T  14654470 cagcagcttgtccatctttcaactcatacctttctcggcc 14654431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 101 - 339
Target Start/End: Complemental strand, 14664461 - 14664222
Alignment:
Q  101 atgaccactaccattaccattgattgtttctagctgatgcaagttctaatggatgaattggtgaaatgctttagtgggctctatgttggca-taacctct 199  Q
    |||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||| || |||||    
T  14664461 atgaccactaccattatcattgattgtttctagctgatgcatgttgtaatggatgaattggtgaaatgctttagtggcctctatgttggcaatatcctct 14664362  T
Q  200 gcttggtaattgctctttgttggcaacgcatgtgtacaatgagaaatagtcccacatcgagtagtcaagaaagcaactgagaacatgtctgatataaaag 299  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||    
T  14664361 gcttggtaattgctctttgttggcaacacatgcgtacaatgagaaatagtcccacatcgagcagtcaagaaagcaactgagaaaatgtctaatataaaag 14664262  T
Q  300 cagcaacgagcccatctttcaactcatacctttctcggcc 339  Q
    ||||| |  | |||||||||||||||||||||||||||||    
T  14664261 cagcagcttgtccatctttcaactcatacctttctcggcc 14664222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 152 - 339
Target Start/End: Original strand, 14708407 - 14708594
Alignment:
Q  152 gatgaattggtgaaatgctttagtgggctctatgttggcataacctctgcttggtaattgctctttgttggcaacgcatgtgtacaatgagaaatagtcc 251  Q
    ||||||||| ||||||| ||||||||| ||| ||||||||||  ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  14708407 gatgaattgctgaaatgatttagtgggatctttgttggcatatactctgcttggtaattgctctttgttggtaacgcatgtgtgcaatgagaaatagtcc 14708506  T
Q  252 cacatcgagtagtcaagaaagcaactgagaacatgtctgatataaaagcagcaacgagcccatctttcaactcatacctttctcggcc 339  Q
    ||||||||| |||||||||||||| |||||| ||||| ||||||||||||  |  |||||||||||||||||||||||||||||||||    
T  14708507 cacatcgagcagtcaagaaagcaattgagaaaatgtcagatataaaagcactagtgagcccatctttcaactcatacctttctcggcc 14708594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 187 - 339
Target Start/End: Original strand, 14705952 - 14706104
Alignment:
Q  187 tggcataacctctgcttggtaattgctctttgttggcaacgcatgtgtacaatgagaaatagtcccacatcgagtagtcaagaaagcaactgagaacatg 286  Q
    |||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||| ||||||||||| |||||||||| |     
T  14705952 tggcataacctctgcttggtaattgctctttgttggcaacacatgcatacaatgagaaatagtcccacatcgagcagtcaagaaagaaactgagaacgtt 14706051  T
Q  287 tctgatataaaagcagcaacgagcccatctttcaactcatacctttctcggcc 339  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  14706052 tctgatataaaagcagcaccgagcccatctttcaactcatacctttctcggcc 14706104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 144 - 339
Target Start/End: Original strand, 14716113 - 14716307
Alignment:
Q  144 ttctaatggatgaattggtgaaatgctttagtgggctctatgttggcataacctctgcttggtaattgctctttgttggcaacgcatgtgtacaatgaga 243  Q
    ||||| |||||||||||||||||| | || ||||||||||||||| | ||  |||||||||| |||||||||||||||||||| |||| |||||||||||    
T  14716113 ttctagtggatgaattggtgaaatacgttggtgggctctatgttg-cgtatgctctgcttggaaattgctctttgttggcaacacatgcgtacaatgaga 14716211  T
Q  244 aatagtcccacatcgagtagtcaagaaagcaactgagaacatgtctgatataaaagcagcaacgagcccatctttcaactcatacctttctcggcc 339  Q
    ||||||||||||| ||| ||||| ||||  ||||||||| ||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||    
T  14716212 aatagtcccacattgagcagtcacgaaaataactgagaagatgtctgatataaaagcagcaccgagttcatctttcaactcatacctttctcggcc 14716307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 145 - 339
Target Start/End: Original strand, 14674295 - 14674497
Alignment:
Q  145 tctaatggatgaattggtgaaatgctttagtgggctctatgttggcataacctctgcttggtaattgctcttt-gttggc--------aacgcatgtgta 235  Q
    |||| ||||||||||| ||||||| ||||||||||||||||||| ||||  | ||||||||||||| |||||| ||||||        ||| |||| |||    
T  14674295 tctattggatgaattgttgaaatgatttagtgggctctatgttgacatatacactgcttggtaatttctcttttgttggcctagtaggaacacatgcgta 14674394  T
Q  236 caatgagaaatagtcccacatcgagtagtcaagaaagcaactgagaacatgtctgatataaaagcagcaacgagcccatctttcaactcatacctttctc 335  Q
    ||||| ||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||| | |||| ||||| |||||||||||||||||    
T  14674395 caatgggaaatagtcccacatcgagcagtcaagaaagcaacggagaa-atgtctgatataaaagcagcacctagccaatcttccaactcatacctttctc 14674493  T
Q  336 ggcc 339  Q
    ||||    
T  14674494 ggcc 14674497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 145 - 339
Target Start/End: Original strand, 14679673 - 14679875
Alignment:
Q  145 tctaatggatgaattggtgaaatgctttagtgggctctatgttggcataacctctgcttggtaattgctcttt-gttggc--------aacgcatgtgta 235  Q
    |||| ||||||||||| ||||||| ||||||||||||||||||| ||||  | ||||||||||||| |||||| ||||||        ||| |||| |||    
T  14679673 tctattggatgaattgttgaaatgatttagtgggctctatgttgacatatacactgcttggtaatttctcttttgttggcctagtaggaacacatgcgta 14679772  T
Q  236 caatgagaaatagtcccacatcgagtagtcaagaaagcaactgagaacatgtctgatataaaagcagcaacgagcccatctttcaactcatacctttctc 335  Q
    ||||| ||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||| | |||| ||||| |||||||||||||||||    
T  14679773 caatgggaaatagtcccacatcgagcagtcaagaaagcaacggagaa-atgtctgatataaaagcagcacctagccaatcttccaactcatacctttctc 14679871  T
Q  336 ggcc 339  Q
    ||||    
T  14679872 ggcc 14679875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 211 - 339
Target Start/End: Original strand, 14676520 - 14676648
Alignment:
Q  211 gctctttgttggcaacgcatgtgtacaatgagaaatagtcccacatcgagtagtcaagaaagcaactgagaacatgtctgatataaaagcagcaacgagc 310  Q
    |||||||||||||||  |||  |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||| ||| | ||     
T  14676520 gctctttgttggcaatacatacgtacaatgagaaatagtcccacatcgagcagtcaagaaagcaactgagaagatgtctgttataaaagcggcagctagt 14676619  T
Q  311 ccatctttcaactcatacctttctcggcc 339  Q
    |||| ||||||||||||||||||||||||    
T  14676620 ccatatttcaactcatacctttctcggcc 14676648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 211 - 339
Target Start/End: Original strand, 14683638 - 14683766
Alignment:
Q  211 gctctttgttggcaacgcatgtgtacaatgagaaatagtcccacatcgagtagtcaagaaagcaactgagaacatgtctgatataaaagcagcaacgagc 310  Q
    |||||||||||||||  |||  |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||| ||| | ||     
T  14683638 gctctttgttggcaatacatacgtacaatgagaaatagtcccacatcgagcagtcaagaaagcaactgagaagatgtctgttataaaagcggcagctagt 14683737  T
Q  311 ccatctttcaactcatacctttctcggcc 339  Q
    |||| ||||||||||||||||||||||||    
T  14683738 ccatatttcaactcatacctttctcggcc 14683766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 96 - 191
Target Start/End: Original strand, 14676438 - 14676533
Alignment:
Q  96 ctttaatgaccactaccattaccattgattgtttctagctgatgcaagttctaatggatgaattggtgaaatgctttagtgggctctatgttggca 191  Q
    ||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  14676438 ctttaatgaccgctacaatcaccattgattgtttctagctgatgcaagttctaatggatgaattggtgaaatgctttagtgggctctttgttggca 14676533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 96 - 191
Target Start/End: Original strand, 14683556 - 14683651
Alignment:
Q  96 ctttaatgaccactaccattaccattgattgtttctagctgatgcaagttctaatggatgaattggtgaaatgctttagtgggctctatgttggca 191  Q
    ||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  14683556 ctttaatgaccgctacaatcaccattgattgtttctagctgatgcaagttctaatggatgaattggtgaaatgctttagtgggctctttgttggca 14683651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 228 - 339
Target Start/End: Original strand, 14681505 - 14681615
Alignment:
Q  228 catgtgtacaatgagaaatagtcccacatcgagtagtcaagaaagcaactgagaacatgtctgatataaaagcagcaacgagcccatctttcaactcata 327  Q
    |||| |||||||| ||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||| | ||||||| |||||||| |||    
T  14681505 catgcgtacaatgggaaatagtcccacatcgagcagtcaagaaagcaacggagaa-atgtctgatataaaagcagcacctagcccatttttcaacttata 14681603  T
Q  328 cctttctcggcc 339  Q
    ||||||||||||    
T  14681604 cctttctcggcc 14681615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 217 - 339
Target Start/End: Original strand, 14652419 - 14652541
Alignment:
Q  217 tgttggcaacgcatgtgtacaatgagaaatagtcccacatcgagtagtcaagaaagcaactgagaacatgtctgatataaaagcagcaacgagcccatct 316  Q
    |||||||||| |||| |||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||| ||||||| |  | || ||     
T  14652419 tgttggcaacacatgcgtacaatgagaaatagtcccacatcgagcagtcaagaaaacaactgagaagatgtctgatataagagcagcagctggtccttca 14652518  T
Q  317 ttcaactcatacctttctcggcc 339  Q
    || || |||||||||||||||||    
T  14652519 ttgaaatcatacctttctcggcc 14652541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 217 - 339
Target Start/End: Original strand, 14662210 - 14662332
Alignment:
Q  217 tgttggcaacgcatgtgtacaatgagaaatagtcccacatcgagtagtcaagaaagcaactgagaacatgtctgatataaaagcagcaacgagcccatct 316  Q
    |||||||||| |||| |||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||| ||||||| |  | || ||     
T  14662210 tgttggcaacacatgcgtacaatgagaaatagtcccacatcgagcagtcaagaaaacaactgagaagatgtctgatataagagcagcagctggtccttca 14662309  T
Q  317 ttcaactcatacctttctcggcc 339  Q
    || || |||||||||||||||||    
T  14662310 ttgaaatcatacctttctcggcc 14662332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 14676334 - 14676386
Alignment:
Q  19 aagaacttcaagatgcttaagctggcctaatgaaagttactgaacaaattaag 71  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  14676334 aagaaattcaagatgcttaagctggcctaatgaaagttactgaacaaattaag 14676386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 14683452 - 14683504
Alignment:
Q  19 aagaacttcaagatgcttaagctggcctaatgaaagttactgaacaaattaag 71  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  14683452 aagaaattcaagatgcttaagctggcctaatgaaagttactgaacaaattaag 14683504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 248 - 339
Target Start/End: Complemental strand, 14667292 - 14667202
Alignment:
Q  248 gtcccacatcgagtagtcaagaaagcaactgagaacatgtctgatataaaagcagcaacgagcccatctttcaactcatacctttctcggcc 339  Q
    ||||||||||||| |||||||||| |||||||||||||||| |||||||||||||| | || | ||| ||  ||||||||||||||||||||    
T  14667292 gtcccacatcgaggagtcaagaaaacaactgagaacatgtcagatataaaagcagc-aggatctcatgttgtaactcatacctttctcggcc 14667202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 193
Target Start/End: Complemental strand, 14667398 - 14667350
Alignment:
Q  145 tctaatggatgaattggtgaaatgctttagtgggctctatgttggcata 193  Q
    |||||||||||||||| ||||| | ||||||| ||||||||||||||||    
T  14667398 tctaatggatgaattgctgaaaggatttagtgtgctctatgttggcata 14667350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 193
Target Start/End: Original strand, 14681419 - 14681467
Alignment:
Q  145 tctaatggatgaattggtgaaatgctttagtgggctctatgttggcata 193  Q
    |||| |||||||||||  |||||| |||||| |||||||||||||||||    
T  14681419 tctattggatgaattgcagaaatgatttagtaggctctatgttggcata 14681467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 339
Target Start/End: Complemental strand, 28366338 - 28366290
Alignment:
Q  291 atataaaagcagcaacgagcccatctttcaactcatacctttctcggcc 339  Q
    ||||||||||||   ||| ||| ||||||||||||||||||||||||||    
T  28366338 atataaaagcagatgcgaacccctctttcaactcatacctttctcggcc 28366290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 339
Target Start/End: Original strand, 33988038 - 33988086
Alignment:
Q  291 atataaaagcagcaacgagcccatctttcaactcatacctttctcggcc 339  Q
    |||||||||||  |  ||| |||||||||||||||||||||||||||||    
T  33988038 atataaaagcataagtgagtccatctttcaactcatacctttctcggcc 33988086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 301
Target Start/End: Complemental strand, 10944581 - 10944527
Alignment:
Q  247 agtcccacatcgagtagtcaagaaagcaactgagaacatgtctgatataaaagca 301  Q
    |||||||||||||| | |||||||| |||| ||||||||||| ||||||||||||    
T  10944581 agtcccacatcgaggaatcaagaaaacaaccgagaacatgtcagatataaaagca 10944527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 290 - 339
Target Start/End: Complemental strand, 41841292 - 41841243
Alignment:
Q  290 gatataaaagcagcaacgagcccatctttcaactcatacctttctcggcc 339  Q
    ||||||||||||| | | | ||||||||||||||||||||||||||||||    
T  41841292 gatataaaagcagaagccaacccatctttcaactcatacctttctcggcc 41841243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 147 - 223
Target Start/End: Complemental strand, 10944688 - 10944616
Alignment:
Q  147 taatggatgaattggtgaaatgctttagtgggctctatgttggcataacctctgcttggtaattgctctttgttggc 223  Q
    |||||||||||||| ||||||| ||||||| ||||||||||| ||||      ||||||||||||||||||| ||||    
T  10944688 taatggatgaattgttgaaatgatttagtgtgctctatgttgccata----tagcttggtaattgctctttggtggc 10944616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 339
Target Start/End: Original strand, 44878950 - 44878999
Alignment:
Q  290 gatataaaagcagcaacgagcccatctttcaactcatacctttctcggcc 339  Q
    |||||||||||||   |||||||| | |||||||||||||||||||||||    
T  44878950 gatataaaagcagaggcgagcccaacattcaactcatacctttctcggcc 44878999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 339
Target Start/End: Complemental strand, 44880971 - 44880922
Alignment:
Q  290 gatataaaagcagcaacgagcccatctttcaactcatacctttctcggcc 339  Q
    |||||||||||||   |||||||| | |||||||||||||||||||||||    
T  44880971 gatataaaagcagaggcgagcccaacattcaactcatacctttctcggcc 44880922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 289 - 339
Target Start/End: Complemental strand, 10796031 - 10795981
Alignment:
Q  289 tgatataaaagcagcaacgagcccatctttcaactcatacctttctcggcc 339  Q
    |||||||||||||| | | ||| | ||||||||||||||||||||||||||    
T  10796031 tgatataaaagcagaagccagctcttctttcaactcatacctttctcggcc 10795981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 289 - 339
Target Start/End: Complemental strand, 50077340 - 50077290
Alignment:
Q  289 tgatataaaagcagcaacgagcccatctttcaactcatacctttctcggcc 339  Q
    |||||||||||||| | | ||| | ||||||||||||||||||||||||||    
T  50077340 tgatataaaagcagaagccagctcttctttcaactcatacctttctcggcc 50077290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 223
Target Start/End: Complemental strand, 23267717 - 23267684
Alignment:
Q  190 cataacctctgcttggtaattgctctttgttggc 223  Q
    |||| |||||||||||||||||||||||||||||    
T  23267717 catatcctctgcttggtaattgctctttgttggc 23267684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University