View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17569_low_27 (Length: 336)
Name: NF17569_low_27
Description: NF17569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17569_low_27 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 50225636 - 50225308
Alignment:
| Q |
1 |
aaaaaaggactaaccctagtcaagcaaatttcctgttttcattttgtttttctctctcgaatcttaggctcagctacgtttggcctgacttatgttgaca |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50225636 |
aaaaaaggactaaccctagtcaagtaaatttcctgttttcattttgtttttctctctcgagtcttaggctcagctacgtttggcctgacttatgttgaca |
50225537 |
T |
|
| Q |
101 |
ttaaaagttactttaaagttaaagcttagctaaaaataggagctatagaaataaagctaaaattgtttgttgattattgttacttttttgcttaa--nnn |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50225536 |
ttaaaagttactttaaagttaaagcttagctaaaaataggagctatagaaataaagctaaaattgtttgttgattattgttacttttttgcttaattttt |
50225437 |
T |
|
| Q |
199 |
nnnnnnnnnatagaatggaaaatttgagttgaataataaaaaatatatgaaacaaagatcaaagatctcctacaagctcatttcttaattaagatcttct |
298 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
50225436 |
tttttttttatagaatggaaaatttgagttaaataataaaaaatatatgaaacaaagatcaaagatctcctacaagctcatttcttaattaagatctttt |
50225337 |
T |
|
| Q |
299 |
aaaaaatactattcgacctaacttctttt |
327 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
50225336 |
aaaaaatactattcgacctaacttctttt |
50225308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 182
Target Start/End: Complemental strand, 42930472 - 42930436
Alignment:
| Q |
146 |
tagaaataaagctaaaattgtttgttgattattgtta |
182 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| |
|
|
| T |
42930472 |
tagaaataaagctaaaattgtttgttaattattgtta |
42930436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 78 - 193
Target Start/End: Complemental strand, 3032052 - 3031942
Alignment:
| Q |
78 |
gtttggcctgacttatgttgacattaaaagttactttaaagttaaagcttagctaaaaataggagctatagaaataaagctaaaattgtttgttgattat |
177 |
Q |
| |
|
||||||||| |||||| ||||||||||||| || |||||| |||||||| ||||||| || | |||| |||||| |||| ||||||| | ||||| |
|
|
| T |
3032052 |
gtttggcctaacttattttgacattaaaagctattttaaaattaaagct-----aaaaataagatatttagagataaagttaaagttgtttgataattat |
3031958 |
T |
|
| Q |
178 |
tgttacttttttgctt |
193 |
Q |
| |
|
|||||| |||| |||| |
|
|
| T |
3031957 |
tgttaccttttagctt |
3031942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 128 - 195
Target Start/End: Original strand, 11423251 - 11423318
Alignment:
| Q |
128 |
agctaaaaataggagctatagaaataaagctaaaattgtttgttgattattgttacttttttgcttaa |
195 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||| ||||||| | |||||||||| ||||| |||||| |
|
|
| T |
11423251 |
agctaaaaattagagctttagaaataaagctaaagttgtttgataattattgttattttttagcttaa |
11423318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 284 - 327
Target Start/End: Complemental strand, 32305118 - 32305075
Alignment:
| Q |
284 |
taattaagatcttctaaaaaatactattcgacctaacttctttt |
327 |
Q |
| |
|
||||||||||||| |||||||| ||||| ||||||||||||||| |
|
|
| T |
32305118 |
taattaagatcttttaaaaaatgctatttgacctaacttctttt |
32305075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University