View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17569_low_28 (Length: 324)
Name: NF17569_low_28
Description: NF17569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17569_low_28 |
 | |
|
| [»] chr1 (7 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 8 - 324
Target Start/End: Complemental strand, 24436340 - 24436024
Alignment:
| Q |
8 |
catcatcatcattaacaaaagaaagaatgacaccttcaacatatctatccttattgctcaccatatcaatgatctttatttctcacgccatttcaccaac |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24436340 |
catcatcatcattaacaaaagaaagaatgacaccttcaacatatctatccttattgctcaccatatcaatgatctttatttctcacgccatttcaccaac |
24436241 |
T |
|
| Q |
108 |
atcaagccctaatttgtataaaagtgtatgtaaagaaactattaaacaagacccccactatgaacaaccttgcctgaaacttttagaaccctacccacaa |
207 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24436240 |
atcaagccctaacttgtataaaagtgtatgtaaagaaactaataaacaagacccccactatgaacaaccttgcctgaaacttttagaaccctacccacaa |
24436141 |
T |
|
| Q |
208 |
attacttctgccaaagattatctaactttttcaagattatttttaaggattgtggcaatacataatgcaacaaaagcccaacatcaagtcaaagaaatga |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24436140 |
attacttctgccaaagattatctaactttttcaagattatttttaaggattgtggcaatagagaatgcaacaaaagcccaacatcaagtcaaagaaatga |
24436041 |
T |
|
| Q |
308 |
agcaaaagtatccttct |
324 |
Q |
| |
|
|| |||||||||||||| |
|
|
| T |
24436040 |
agaaaaagtatccttct |
24436024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 15 - 309
Target Start/End: Original strand, 23995142 - 23995430
Alignment:
| Q |
15 |
atcattaacaaaagaaagaatgacaccttcaacatatctatccttattgctcaccatatcaatgatctttatttctcacgccatttcaccaacatcaagc |
114 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||| |||| || || |||||||| ||| |||| ||| ||||||| |||||| | ||| ||||||| |
|
|
| T |
23995142 |
atcactaacaaaagaaagaatgacaccttcatcatatttatctttgtttctcaccatttcagtgatttttttttctcatgccattcctgcaaaatcaagc |
23995241 |
T |
|
| Q |
115 |
cctaatttgtataaaagtgtatgtaaagaaactattaaacaagacccccactatgaacaaccttgcctgaaacttttagaaccctacccacaaattactt |
214 |
Q |
| |
|
||||| ||||| ||||||||||||| ||| || | |||| | |||||||| ||| ||||| |||||| ||||||| |||||||||| |
|
|
| T |
23995242 |
cctaagttgtaccaaagtgtatgtaaggaatctcgccacaaagat------tttgaacaacgctgcttgaaaacattagaagcctaccctcaaattactt |
23995335 |
T |
|
| Q |
215 |
ctgccaaagattatctaactttttcaagattatttttaaggattgtggcaatacataatgcaacaaaagcccaacatcaagtcaaagaaatgaag |
309 |
Q |
| |
|
| || |||||||||| || ||||| ||||||| | ||| ||||||||||||| | |||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
23995336 |
cgaccgaagattatcttacattttccagattatatctaaagattgtggcaataaagaatgcaggaaaagctcaacatcaagtcaaagaaatgaag |
23995430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 23922842 - 23922752
Alignment:
| Q |
18 |
attaacaaaagaaagaatgacaccttcaacatatctatccttattgctcaccatatcaatgatctttatttctcacgccatttcaccaaca |
108 |
Q |
| |
|
|||||||||||| | |||| || ||||| | ||| ||||| | ||||||||||| |||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
23922842 |
attaacaaaagagaaaatggcatcttcagcctatttatccattttgctcaccatttcaatgatctttgtttctcatgccatttcaccaaca |
23922752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 38 - 108
Target Start/End: Complemental strand, 25803274 - 25803204
Alignment:
| Q |
38 |
caccttcaacatatctatccttattgctcaccatatcaatgatctttatttctcacgccatttcaccaaca |
108 |
Q |
| |
|
|||||||||||||| |||| || ||||||||||| |||||||| ||||||||||| || |||||||||||| |
|
|
| T |
25803274 |
caccttcaacatatttatcatttttgctcaccatttcaatgatgtttatttctcatgctatttcaccaaca |
25803204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 23 - 115
Target Start/End: Complemental strand, 23915188 - 23915096
Alignment:
| Q |
23 |
caaaagaaagaatgacaccttcaacatatctatccttattgctcaccatatcaatgatctttatttctcacgccatttcaccaacatcaagcc |
115 |
Q |
| |
|
||||||| | |||| || ||||||| ||| ||||| | ||||||||||| ||||||||||||||||| || |||| |||||||||| |||||| |
|
|
| T |
23915188 |
caaaagagaaaatggcatcttcaacctatttatccattttgctcaccatttcaatgatctttatttcccatgccaattcaccaacaccaagcc |
23915096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 108
Target Start/End: Original strand, 23989837 - 23989912
Alignment:
| Q |
33 |
aatgacaccttcaacatatctatccttattgctcaccatatcaatgatctttatttctcacgccatttcaccaaca |
108 |
Q |
| |
|
|||||| | |||| ||||| ||||||| || |||||||| ||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
23989837 |
aatgactctttcatcatatttatccttgttactcaccatctcaatgaactttatttctcatgccatttcaccaaca |
23989912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 108
Target Start/End: Original strand, 5253011 - 5253058
Alignment:
| Q |
61 |
ttgctcaccatatcaatgatctttatttctcacgccatttcaccaaca |
108 |
Q |
| |
|
||||||||||| |||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
5253011 |
ttgctcaccatttcaatgatctctatttctcatgccatttcaccaaca |
5253058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 11 - 320
Target Start/End: Original strand, 13435761 - 13436064
Alignment:
| Q |
11 |
catcatcattaacaaaagaaagaatgacaccttcaacatatctatccttattgctcaccatatcaatgatctttatttctcacgccatttcaccaacatc |
110 |
Q |
| |
|
|||||||||||||| |||| || ||| ||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
13435761 |
catcatcattaacataagagaggatggcaccttccacaaatttatccttattgctcaccatatcaatgatctttatttctcacgccatttcacgaacatc |
13435860 |
T |
|
| Q |
111 |
aagccctaatttgtataaaagtgtatgtaaagaaactattaaacaagacccccactatgaacaaccttgcctgaaacttttagaaccctacccacaaatt |
210 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| | ||| || | |||||||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
13435861 |
aagccctaatttgtacaaaagtgtatgtaaagaaattggtaaggaa------ccctatgaacaaccttgcttgaaacttttagaaacctacccacaaatt |
13435954 |
T |
|
| Q |
211 |
acttctgccaaagattatctaactttttcaagattatttttaaggattgtggcaatacataatgcaacaaaagcccaacatcaagtcaaagaaatgaagc |
310 |
Q |
| |
|
||||| |||| ||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||| | |
|
|
| T |
13435955 |
acttcagccatagattatcttaccttttcaagattatttttaaggattgtggcaatagataatgcaacaaaagtccaacataaagtcaaagaaatgacga |
13436054 |
T |
|
| Q |
311 |
aaaagtatcc |
320 |
Q |
| |
|
|||| ||||| |
|
|
| T |
13436055 |
aaaaatatcc |
13436064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 8e-18; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 33 - 302
Target Start/End: Complemental strand, 35074891 - 35074628
Alignment:
| Q |
33 |
aatgacaccttcaacatatctatccttattgctcaccatatcaatgatctttatttctcacgccatttcaccaacatcaagccctaatttgtataaaagt |
132 |
Q |
| |
|
|||| ||||||||||||| ||||||| || ||| || |||||||||||||||| ||| ||| ||||||||||| |||||||||| ||||| || || |
|
|
| T |
35074891 |
aatggcaccttcaacatacttatccttttttatcattatttcaatgatctttatttgtcatgccctttcaccaacaccaagccctaagttgtacgaacgt |
35074792 |
T |
|
| Q |
133 |
gtatgtaaagaaactattaaacaagacccccactatgaacaaccttgcctgaaacttttagaaccctacccacaaattacttctgccaaagattatctaa |
232 |
Q |
| |
|
|||| |||||| || | || ||| ||| |||||||| ||| || |||||| ||||| | ||||| |||||||||| | |||||||||||| |
|
|
| T |
35074791 |
atatgcaaagaatctggtcaaaaag------actttgaacaacgttgtctcaaacttatagaagcttaccctcaaattactttgatcgaagattatctaa |
35074698 |
T |
|
| Q |
233 |
ctttttcaagattatttttaaggattgtggcaatacataatgcaacaaaagcccaacatcaagtcaaaga |
302 |
Q |
| |
|
|||||| || | |||||||| ||||||||||||| | || ||| |||| ||||||| ||||| ||||| |
|
|
| T |
35074697 |
ctttttgcaggtcatttttaaagattgtggcaatagagaaggcagtaaaatcccaacaacaagttaaaga |
35074628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 73 - 144
Target Start/End: Complemental strand, 35079823 - 35079749
Alignment:
| Q |
73 |
tcaatgatctttatttctcacgccatttcac---caacatcaagccctaatttgtataaaagtgtatgtaaagaa |
144 |
Q |
| |
|
||||||||||||||||| || |||||||||| ||||| ||||||| || ||||| |||||||||||||||||| |
|
|
| T |
35079823 |
tcaatgatctttatttcccatgccatttcactaccaacaccaagccccaagttgtacaaaagtgtatgtaaagaa |
35079749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 305
Target Start/End: Complemental strand, 35079680 - 35079594
Alignment:
| Q |
219 |
caaagattatctaactttttcaagattatttttaaggattgtggcaatacataatgcaacaaaagcccaacatcaagtcaaagaaat |
305 |
Q |
| |
|
||||||||||||||| |||| || | ||||||| || |||||||||| | || |||| |||| ||||||||| |||||||||||| |
|
|
| T |
35079680 |
caaagattatctaaccttttgcaggtcctttttaaagactgtggcaataaagaaggcaataaaatcccaacatcgagtcaaagaaat |
35079594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University