View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17569_low_3 (Length: 584)
Name: NF17569_low_3
Description: NF17569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17569_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 529; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 1 - 567
Target Start/End: Complemental strand, 2700014 - 2699444
Alignment:
| Q |
1 |
tttggtgaggatggttttttggtgcgtgggagtatgaagttacctgattttgcgcgtgtggttgatacgaaagattgtaaaggtaattgtttacagaatg |
100 |
Q |
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| T |
2700014 |
tttggtgaggatggttttttggtgcgtgggagtatgaagttacctgattttgcgcgtgtggttgatacgaaagattgtaaaggtaattgtttacagaatg |
2699915 |
T |
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| Q |
101 |
gttcttgtactgcttatgctgaagttattggaattggttgtatggtttggtatggagatttggttgatattctacactctcaacatggagaaggaaacgc |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
2699914 |
gttcttgtactgcttatgcagaagttattggaattggttgtatggtttggtatggagatttggttgatattctacactttcaacatggagaaggaaacgc |
2699815 |
T |
|
| Q |
201 |
tctgcacattcgtctcgcttattctgatttaggtaaagtactaagaataccttgagttttgtttcatgtatggttctttggttttgatttcatttatcag |
300 |
Q |
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| T |
2699814 |
tctgcacattcgtctcgcttattctgatttaggtaaagtactaagaataccttgagttttgtttcatgtatggttctttggttttgatttcatttatcag |
2699715 |
T |
|
| Q |
301 |
tactaa-ttgtcctgtatcgttcttgagtaactctttcaattggactcactttagttaactaataaattaatgttatagctaattagccgaataacactg |
399 |
Q |
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|| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2699714 |
taataatttctcctgtatcgttcttgagtaactctttcaattggactcactttagttaactaataaattaatgttatagctaattagccgaataacactg |
2699615 |
T |
|
| Q |
400 |
tcaattgaagtgtaattgttgttagagtattagttaataacaggattatatcttttgtctcgaaatacaggcgatggaggg---aatgaaaagattatga |
496 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
2699614 |
tcaattgaagtgtaattgttgttagagtattagtaaataacaggattatatcttttgtctcgaaatacaggcgatggagggaaaaatgaaaagattatga |
2699515 |
T |
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| Q |
497 |
tggtgataatattaacttctctagcggggttaatttgcataggaatcattgtattgttggtatggaggtac |
567 |
Q |
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| T |
2699514 |
tggtgataatattaacttctctagcggggttaatttgcataggaatcattgtattgttggtatggaggtac |
2699444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 2692315 - 2692080
Alignment:
| Q |
1 |
tttggtgaggatggttttttggtgcgtgggagtatgaagttacctgattttgcgcgtgtggttgatacgaaagattgtaaaggtaattgtttacagaatg |
100 |
Q |
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||||| ||||||||||| |||| |||| | ||||||||||||||| ||||| | |||||||| ||| || |||||| ||||||||||||| ||||| |
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| T |
2692315 |
tttggcgaggatggtttcttggagcgtacgtatatgaagttacctgactttgcacatgtggttgttactaatgattgtgaaggtaattgtttggagaata |
2692216 |
T |
|
| Q |
101 |
gttcttgtactgcttatgctgaagttattggaattggttgtatggtttggtatggagatttggttgatattctacactctcaacatggagaaggaaacgc |
200 |
Q |
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|||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||| ||| ||| | | ||| ||| || ||||| | |
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| T |
2692215 |
cttcttgtactgcttatgcagaagtcattggaattggttgtatgctttggtatggagatttggttgatgttcaacagtttgaacgtggtgatggaaatac |
2692116 |
T |
|
| Q |
201 |
tctgcacattcgtctcgcttattctgatttaggtaa |
236 |
Q |
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|||| |||||||| ||| |||||||||||||||| |
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| T |
2692115 |
attgcatattcgtcttgctcattctgatttaggtaa |
2692080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 487 - 567
Target Start/End: Complemental strand, 2691829 - 2691749
Alignment:
| Q |
487 |
aagattatgatggtgataatattaacttctctagcggggttaatttgcataggaatcattgtattgttggtatggaggtac |
567 |
Q |
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| T |
2691829 |
aagattatgattgtgataatattaactgttatagcagggttaatctgcctaggaatattggtattgttggtatggaggtac |
2691749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 5e-42; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 7 - 178
Target Start/End: Complemental strand, 14521383 - 14521212
Alignment:
| Q |
7 |
gaggatggttttttggtgcgtgggagtatgaagttacctgattttgcgcgtgtggttgatacgaaagattgtaaaggtaattgtttacagaatggttctt |
106 |
Q |
| |
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||||||||||| || | |||| ||||||||||||||| || ||||| |||||||||||||| || |||||| ||||||||||||| |||||| ||||| |
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| T |
14521383 |
gaggatggtttctttgagcgtacgagtatgaagttacccgactttgcacgtgtggttgatactaaggattgtgaaggtaattgtttggagaatgcttctt |
14521284 |
T |
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| Q |
107 |
gtactgcttatgctgaagttattggaattggttgtatggtttggtatggagatttggttgatattctacact |
178 |
Q |
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| T |
14521283 |
gtactgcttatgcagaagtaactggaattggttgtatggtttggcatggagatttggtcgatgttcaacact |
14521212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 492 - 563
Target Start/End: Complemental strand, 14520956 - 14520885
Alignment:
| Q |
492 |
tatgatggtgataatattaacttctctagcggggttaatttgcataggaatcattgtattgttggtatggag |
563 |
Q |
| |
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|||||| ||||| |||| |||| || || | |||||||| ||| |||||||| ||||||||||||||||||| |
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| T |
14520956 |
tatgattgtgattatatcaactgctgtaacagggttaatctgcctaggaatctttgtattgttggtatggag |
14520885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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