View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17569_low_30 (Length: 314)
Name: NF17569_low_30
Description: NF17569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17569_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 17 - 307
Target Start/End: Complemental strand, 38942414 - 38942124
Alignment:
| Q |
17 |
ctttctcctcagtgaccttgagctgtctgccctttctatctttgaccagtccatcacnnnnnnnctcagccatggcttgtgcatctttcatcggtttctt |
116 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
38942414 |
ctttctcctcagtgaccttgagctgtctgccctttctatctttgaccagtccatcactttttttctcagccatggcttgtgcatctttcatcggtttctt |
38942315 |
T |
|
| Q |
117 |
tttcagctccatctgcatagtgatatagatatagatagataagnnnnnnntaaagcatgtaattacagtttcaggtgaagcaaagaaaacaaattaatat |
216 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38942314 |
tttcagctccatctgcatagtgatatagatatagatagataagaaaaaaataaagcatgtaattacagtttcaggtgaagcaaagaaaacaaattaatat |
38942215 |
T |
|
| Q |
217 |
caaaaaaccaaatgcaatagaagctaaactactactagtgagtcatacccctacttgtgaatctgattcttcaggtccctctttcttctca |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
38942214 |
caaaaaaccaaatgcaatagaagctaaactactactagtgagtcatacccctacttgtgaatctgattcttcaggtccctctttctcctca |
38942124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 17 - 307
Target Start/End: Complemental strand, 38942134 - 38941844
Alignment:
| Q |
17 |
ctttctcctcagtgaccttgagctgtctgccctttctatctttgaccagtccatcacnnnnnnnctcagccatggcttgtgcatctttcatcggtttctt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
38942134 |
ctttctcctcagtgaccttgagctgtctgccctttctatctttgaccagtccatcactttttttctcagccatggcttgtgcatctttcatcggtttctt |
38942035 |
T |
|
| Q |
117 |
tttcagctccatctgcatagtgatatagatatagatagataagnnnnnnntaaagcatgtaattacagtttcaggtgaagcaaagaaaacaaattaatat |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38942034 |
tttcagctccatctgcatagtgatatagatatagatagataagaaaaaaataaagcatgtaattacagtttcaggtgaagcaaagaaaacaaattaatat |
38941935 |
T |
|
| Q |
217 |
caaaaaaccaaatgcaatagaagctaaactactactagtgagtcatacccctacttgtgaatctgattcttcaggtccctctttcttctca |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
38941934 |
caaaaaaccaaatgcaatagaagctaaactactactggtgagtcatacccctacttgtgaatctgattcttcaggtccctctttctcctca |
38941844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 17 - 307
Target Start/End: Complemental strand, 38942696 - 38942404
Alignment:
| Q |
17 |
ctttctcctcagtgaccttgagctgtctgccctttctatctttgaccagtccatcacnnnnnnnctcagccatggcttgtgcatctttcatcggtttctt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |
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| T |
38942696 |
ctttctcctcagtgaccttgagctgtctgccctttctatctttgaccagtccatcacttttttcctcagccttggcttgtgcatctttcatcggtttctt |
38942597 |
T |
|
| Q |
117 |
tttcagctccatctgcatagtgatatagatata--gatagataagnnnnnnntaaagcatgtaattacagtttcaggtgaagcaaagaaaacaaattaat |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38942596 |
tttcagctccatctgcatagtgatatagatatatagatagataagaaaaaaataaagcatgtaattacagtttcaggtgaagcaaagaaaacaaattaat |
38942497 |
T |
|
| Q |
215 |
atcaaaaaaccaaatgcaatagaagctaaactactactagtgagtcatacccctacttgtgaatctgattcttcaggtccctctttcttctca |
307 |
Q |
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|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
38942496 |
atcaaaaaaccaaatgcaatagaagctaaactcctactagtgagtcatacccctacttgtgaatctgattcttcaggtccctctttctcctca |
38942404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 17 - 256
Target Start/End: Complemental strand, 38941854 - 38941613
Alignment:
| Q |
17 |
ctttctcctcagtgaccttgagctgtctgccctttctatctttgaccagtccatcacnnnnnnnctcagccatggcttgtgcatctttcatcggtttctt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
38941854 |
ctttctcctcagtgaccttgagctgtctgccctttctatctttgaccagtccatcactttttttctcagccatggcttgtgcatctttcatcggtttctt |
38941755 |
T |
|
| Q |
117 |
tttcagctccatctgcatagtgatatagatata--gatagataagnnnnnnntaaagcatgtaattacagtttcaggtgaagcaaagaaaacaaattaat |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38941754 |
tttcagctccatctgcatagtgatatagatatatagatagataagaaaaaaataaagcatgtaattacagtttcaggtgaagcaaagaaaacaaattaat |
38941655 |
T |
|
| Q |
215 |
atcaaaaaaccaaatgcaatagaagctaaactactactagtg |
256 |
Q |
| |
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|| ||||||||||||||||||| || |||||||||||||||| |
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| T |
38941654 |
attaaaaaaccaaatgcaataggagttaaactactactagtg |
38941613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 167 - 307
Target Start/End: Complemental strand, 38942826 - 38942686
Alignment:
| Q |
167 |
taaagcatgtaattacagtttcaggtgaagcaaagaaaacaaattaatatcaaaaaaccaaatgcaatagaagctaaactactactagtgagtcataccc |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||| |||||||||||| |
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| T |
38942826 |
taaagcatgtaattacagtttcaggtgaagcaaagaaaacaaattaatattcaaaaaccaaatgcaatagaagttaaaccactactattgagtcataccc |
38942727 |
T |
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| Q |
267 |
ctacttgtgaatctgattcttcaggtccctctttcttctca |
307 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| |||| |
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| T |
38942726 |
ctacttgtgaaactgattcttcaggtccctctttctcctca |
38942686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 17 - 120
Target Start/End: Complemental strand, 38941554 - 38941448
Alignment:
| Q |
17 |
ctttctcctcagtgaccttgagctgtctgccctttctatctttgaccagtccatcacnnnnnnnctca---gccatggcttgtgcatctttcatcggttt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||| ||| |||||||||||||||||||| |||| |
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| T |
38941554 |
ctttctcctcagtgaccttgagctgtcttccctttctatctttgaccagttcatcactttttttctcagccgccttggcttgtgcatctttcatcagttt |
38941455 |
T |
|
| Q |
114 |
ctttttc |
120 |
Q |
| |
|
|| |||| |
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|
| T |
38941454 |
ctctttc |
38941448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 249 - 307
Target Start/End: Complemental strand, 38941602 - 38941544
Alignment:
| Q |
249 |
tactagtgagtcatacccctacttgtgaatctgattcttcaggtccctctttcttctca |
307 |
Q |
| |
|
|||||||||||| |||||||| || ||||||||||||||||||||||||||||| |||| |
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|
| T |
38941602 |
tactagtgagtcgtacccctaattctgaatctgattcttcaggtccctctttctcctca |
38941544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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