View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17569_low_34 (Length: 286)
Name: NF17569_low_34
Description: NF17569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17569_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 16 - 275
Target Start/End: Original strand, 28926520 - 28926774
Alignment:
| Q |
16 |
ggtttatggaatctatgtttcgaggactctcttgattccaa-ctcttagcaatgcttctgcatctcagattcctcttgcttttgtatcttccaccttgct |
114 |
Q |
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| T |
28926520 |
ggtttatggaatctatgtttcgaggactctcttgattccaatctcttagcaatgcttctgcatctcagattcctcttgcttttgtatctcccaccttgct |
28926619 |
T |
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| Q |
115 |
ttttctgcaaaacccaacatctataacttttattcacgtgtgaacttggtttttgtttcaactgaaaaaggtataccattaagagtatgaacttggatta |
214 |
Q |
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| T |
28926620 |
ttttctgtaaaacccaacatctataac------aagagtatgaacttggtttttgtttcaactgaaaaaggtacaccattaagagtatgaacttggatta |
28926713 |
T |
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| Q |
215 |
acttccccacaaattcagtttagaagtattacatgaactcaaacaagcaagtcattttcat |
275 |
Q |
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| T |
28926714 |
acttccccacaaattcagtttacaagcattagatgaactgaaacaagcaagtcattttcat |
28926774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 143
Target Start/End: Original strand, 14286373 - 14286447
Alignment:
| Q |
69 |
cttctgcatctcagattcctcttgcttttgtatcttccaccttgctttttctgcaaaacccaacatctataactt |
143 |
Q |
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| T |
14286373 |
cttctgcatcacagattccaatagctctcgtaccctccaccattccttttctgcaaaacccaacatctataactt |
14286447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 41 - 209
Target Start/End: Complemental strand, 7120370 - 7120198
Alignment:
| Q |
41 |
actctcttgattccaa-ctcttagcaatgcttctgcatctcagattcctcttgcttttgtatcttccaccttgctttttctgcaaaacccaacatctata |
139 |
Q |
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| T |
7120370 |
actctcctgattccaatctcttagcaaaacttctgcatcacaaattcttccaacttttgtatccaccatcatgccttttctgcaaaactcaacatgtata |
7120271 |
T |
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| Q |
140 |
acttttattcacgtgtgaacttggtttttgtttcaactgaaaaag---gtataccattaagagtatgaacttg |
209 |
Q |
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| T |
7120270 |
acttctactcttgtgtgaacttggttcgggtttcaactgaaaaaaaaaggacaccattaagagtatgaacttg |
7120198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 93 - 183
Target Start/End: Complemental strand, 7233468 - 7233378
Alignment:
| Q |
93 |
cttttgtatcttccaccttgctttttctgcaaaacccaacatctataacttttattcacgtgtgaacttggtttttgtttcaactgaaaaa |
183 |
Q |
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| T |
7233468 |
cttttgtattctccaccatcctttttttgcaaaacccaacatctataacttctattcttgagtagacttggttctggtttcaaatgaaaaa |
7233378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 205
Target Start/End: Complemental strand, 25071282 - 25071192
Alignment:
| Q |
115 |
ttttctgcaaaacccaacatctataacttttattcacgtgtgaacttggtttttgtttcaactgaaaaaggtataccattaagagtatgaa |
205 |
Q |
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| T |
25071282 |
ttttctgcaaaacccatcatctacaactatagttctcatgggaactttattttggtttcaactgaaaaaataacaccattaagagtatgaa |
25071192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 205
Target Start/End: Complemental strand, 25129257 - 25129167
Alignment:
| Q |
115 |
ttttctgcaaaacccaacatctataacttttattcacgtgtgaacttggtttttgtttcaactgaaaaaggtataccattaagagtatgaa |
205 |
Q |
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| T |
25129257 |
ttttctgcaaaacccatcatctacaactatagttctcatgggaactttattttggtttcaactgaaaaaataacaccattaagagtatgaa |
25129167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 274
Target Start/End: Original strand, 45491602 - 45491706
Alignment:
| Q |
169 |
gtttcaactgaaaaaggtataccattaagagtatgaacttggattaacttccccacaaattcagtttagaagtattacatgaactcaaacaagcaagtca |
268 |
Q |
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| T |
45491602 |
gtttcaactgaaaaa-gtaatccatcaagagggtgtgcttgtatttacttccctacaaattcatattacaagttttacattaacttaaacaagcaggtca |
45491700 |
T |
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| Q |
269 |
ttttca |
274 |
Q |
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| T |
45491701 |
ttttca |
45491706 |
T |
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