View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17569_low_39 (Length: 277)
Name: NF17569_low_39
Description: NF17569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17569_low_39 |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 18 - 270
Target Start/End: Original strand, 34296065 - 34296317
Alignment:
| Q |
18 |
caatcttaatgaacttaaacatgtcttataccaatcaaaaaccaccatgctcctcactcttcacattcgcaaccataaaccatgttcaacttcttcaaaa |
117 |
Q |
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| T |
34296065 |
caatcttaatgaacttaaacatgtcttataccaatcaaaaaccaccatgctcctcactcttcacattcacaaccataaaccatgttcaacttcttcaaaa |
34296164 |
T |
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| Q |
118 |
gattatgccttctaatatttttcctcttgctatcctttgatgtttgtgtgtgtttatcttcttcacttgggaacttcaagttttgtttggataataacaa |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34296165 |
gattatgccttctaatatttttcctcttgctatcctttgatgtttctgtgtgtttatcttcttcacttgggaacttcaagttttgtttggataataacaa |
34296264 |
T |
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| Q |
218 |
aataaaaaactttactgttttcccttacaaagaacatgatcaatcctatgcta |
270 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34296265 |
aataaaaaactttactgttttcccttacaaagaacatgatcaatcctatgcta |
34296317 |
T |
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